TTTTNTTATCTATATTTGCGCCGCTATACGACTACTATATGTCGAGGATC
CGCGGAATTCTCTGCTTGTTGCAACCCTACTACTGTCCCCCAGTTTGCTT
CCTGTTGGAGGTAATGTATCATGTGCTTAATTAAAATTCCTGATGTTATT
AAATCAAGCTTTCATTACAATGTAAAAAAAAATGTGTTCTTTCTTGATCA
TTTAGAAGGAAAGTGCTGAGTAGGCCAGTGCATGCCAGTGCATGCCAATG
CATGCCCAGCAAGATGGTTTACCTCACTGAGTTCCAATTAGAATGGACTA
TTTGAATCCATATGGTTTGAATATGGCTTGTGGGCTAGTCCGAGAACTGA
ATTGTTTACATTTTTTTAAAATGATGAATGCCTTTCCACATTCAAGAAAC
AAACACACAAGAGCCATGTACTGGCACCTCCTACCCAGGTGCACTTATGC
CCATGGAGGGGCAGACAATGGTAGAGTCTGTGGATCAGACACTGGCCCTG
CTGCACACATTGGCTTTTGTTCCCAGGTGTCTTAGTCAGGGTTTCTATTC
CTGCATAAAACACCATGACCAACAAGTTGGGAAGGAAAGGATTTATCCAG
CTTATGCTTCCACATTGCTGTTCGTCAGCAAAGGAAGTCAGGACTGAAAC
TCAAGCAGGTCANGAAGCANGAGCTGATGCATAGGACATGGAGGGATGTT
TCTTACTGGCTTGCTTTACTTGGCTTGCTCAGCTTGTTTTCTTATAGAAC
CTAAGAACTACAGCCCAGGGTTGGGN

NNTTTTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACA
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGTTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGAATA
ATTTGCTAAACACATGGAACTCAAGGAGAATGAAGACTGAAGTGTGGACA
CTATGCCCCTCCCTAGATTNGGGA

Query= MSMg01no507_m24.b1 MSMg01no507_m24.b1 CHROMAT_FILE:
MSMg01no507_m24.b1 PHD_FILE: MSMg01no507_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:29 2005
         (603 letters)



>mm_chr3_83618305_83619307
          Length = 1003

 Score = 1079 bits (558), Expect = 0.0
 Identities = 591/608 (97%), Gaps = 11/608 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctgcttgttgcaaccctactactgtcccccagtttgcttcctgttggaggtaa 65
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 856 gaattctctgcttgttgcaaccctaccactgtcccccagtttgcttcctgttggaggtaa 797

                                                                       
Query: 66  tgtatcatgtgcttaattaaaattcctgatgttattaaatcaagctttcattacaatgta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 796 tgtatcatgtgcttaattaaaattcctgatgttattaaatcaagctttcattacaatgt- 738

                                                                       
Query: 126 aaaaaaaatgtgttctttcttgatcatttagaaggaaagtgctgagtaggccagtgcatg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaaaaaaatgtgttctttcttgatcatttagaaggaaagtgctgagtaggccagtgcatg 678

                                                                       
Query: 186 ccag----------tgcatgccaatgcatgcccagcaagatggtttacctcactgagttc 235
           ||||          ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccagtgcatgccaatgcatgccaatgcatgcccagcaagatggtttacctcactgagttc 618

                                                                       
Query: 236 caattagaatggactatttgaatccatatggtttgaatatggcttgtgggctagtccgag 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caattagaatggactatttgaatccatatggtttgaatatggcttgtgggctagtccgag 558

                                                                       
Query: 296 aactgaattgtttacatttttttaaaatgatgaatgcctttccacattcaagaaacaaac 355
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 557 aactgaattgtttacatttttttttaatgatgaatgcctttccacattcaagaaacaaac 498

                                                                       
Query: 356 acacaagagccatgtactggcacctcctacccaggtgcacttatgcccatggaggggcag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acacaagagccatgtactggcacctcctacccaggtgcacttatgcccatggaggggcag 438

                                                                       
Query: 416 acaatggtagagtctgtggatcagacactggccctgctgcacacattggcttttgttccc 475
            ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 437 gcaatggtagagtctgtggatcagacaccggccccgctgcacacattggcttttgttccc 378

                                                                       
Query: 476 aggtgtcttagtcagggtttctattcctgcataaaacaccatgaccaacaagttgggaag 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggtgtcttagtcagggtttctattcctgcataaaacaccatgaccaacaagttgggaag 318

                                                                       
Query: 536 gaaaggatttatccagcttatgcttccacattgctgttcgtcagcaaaggaagtcaggac 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaaggatttatccagcttatgcttccacattgctgttcgtcagcaaaggaagtcaggac 258

                   
Query: 596 tgaaactc 603
           ||||||||
Sbjct: 257 tgaaactc 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)