BAC Information

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BAC

Clone NameMSMg01-507O06
Chromosome3 (Build37)
Map Location 10,971,183 - 11,168,815
singlet/doubletdoublet
Overlap geneLOC383826, EG667978
Upstream geneFabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507O06.T7 (MSMg01no507_o06.b1)MSMg01-507O06.TJ (MSMg01no507_o06.g1)
ACCAG581931AG581932
length766770
length of high quality
(start - end)		697 (70 - 766)644 (77 - 720)
definitionCHROMAT_FILE: MSMg01no507_o06.b1 PHD_FILE: MSMg01no507_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:35 2005CHROMAT_FILE: MSMg01no507_o06.g1 PHD_FILE: MSMg01no507_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,971,183 - 10,971,879)(11,168,172 - 11,168,815)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGG
AATTCTCACCTGAGGTACACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
AATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATTCTGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
TCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGCACTATTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGTGTGAGGTAACCCAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATGACTGTTTCTACA
TCACCTCAAAAATGTCAACATCATCACACAATGTGGAATAAAACTCTGAG
AACTGATGCTGGAATTTCATGCAAAAAGTCTTTGATAGGTAACCTAAATA
TGACATATTTCAAAAA

CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAAGGCAAAAATAAAAGGTCAAATATAAAA
GTGAGGATGTGAAACTTACAAGGTTGGACATAACAGAAGAGGTATAAGAA
AGGAAAAGCTGATAATAAGCCTATTGCCAAAGGCTGGGAGTCAAGGGGAC
ACTATCTGTAGATAATGCCATGGAAAGTTGAAAGGTACATTTTATCCAGT
ACTCTCCTTTTCTGATCTCCACATATCCCTGATTTTAAAAGCACTCTGTA
TATGCAAATTTCAAGTCATATTGATTTTCTGACTCAGCCTGATTCAGTGC
TGGCCTTGGGGCTGACATAACTAATTTGCTTATGTCTGCCAAGTCCTTTA
CTACTTAATCTTCTGCTTCCCAAATGTTGCGCTCACCTCTCCTCTCAGGT
TCTCTATGCCTTCCCAGAATTACGCCTTGATTAAAAACTCTTGTGGCTCT
TTCTTTTTCCCTGGTGATTCAAAGAGAATAAAGTAAACAAGTACATTTGG
TCTGCCATGTTCAATTTGAACTCCTGCCATTCATTACAAAATTGTCGGTC
TCTGCAATTTAGAAACTGTCTGTGCTGCAAAATTTAATTACATTCTCTTC
TTAATTTCCTTCTTACACAGCTCAGATGATCTGGTACATCTTTTCAAACA
TTCTTATCAAATTTCTCTTATGTCACCCTGTAAGCATCCACCTAGCCAAA
TACCATTATTTCCTTTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_o06.b1 MSMg01no507_o06.b1 CHROMAT_FILE:
MSMg01no507_o06.b1 PHD_FILE: MSMg01no507_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:35 2005
         (697 letters)



>mm_chr3_10970983_10972079
          Length = 1097

 Score = 1270 bits (657), Expect = 0.0
 Identities = 687/697 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 201 ccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaactaca 260

                                                                       
Query: 61  aatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaaaacaaccctgagattccatctcacaccagtcagaatggctaagatcaaaaattc 320

                                                                       
Query: 121 aggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg 180
           ||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aggtgacagcagatgttggtgaggatgtggagaaagaggaacactcctccatttttggtg 380

                                                                       
Query: 181 gaattgcaagctggtacaaccactctggaaatcagtctggcagttcctcagaaaattgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattgcaagctggtacaaccactctggaaatcagtctggcagttcctcagaaaattgga 440

                                                                       
Query: 241 catagtactaccggaggattctgcaatacctctcctgggcatatatccagaagatgttcc 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagtactaccggaggatcctgcaatacctctcctgggcatatatccagaagatgttcc 500

                                                                       
Query: 301 aaccggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccag 560

                                                                       
Query: 361 aagctggaaagaacccagatgtctctcaacagaggaatggatacagaaaatgtggtacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagctggaaagaacccagatgtctctcaacagaggaatggatacagaaaatgtggtacat 620

                                                                       
Query: 421 ttacacaatggagcactattcagctattaaaaagaatgaatttatgaaattcctaggcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ttacacaatggagcactattcagctattaaaaagaatgaatttattaaattcctaggcaa 680

                                                                       
Query: 481 atggatggacctggagggcatcatcctgtgtgaggtaacccaatcacaaaggaactcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggatggacctggagggcatcatcctgtgtgaggtaacccaatcacaaaggaactcaca 740

                                                                       
Query: 541 caatatgtactcactgataagtggatatgactgtttctacatcacctcaaaaatgtcaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatatgtactcactgataagtggatatgactgtttctacatcacctcaaaaatgtcaac 800

                                                                       
Query: 601 atcatcacacaatgtggaataaaactctgagaactgatgctggaatttcatgcaaaaagt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcatcacacaatgtggaataaaactctgagaactgatgctggaatttcatgcaaaaagt 860

                                                
Query: 661 ctttgataggtaacctaaatatgacatatttcaaaaa 697
           ||||||||||||||||||||||||||||| |||||||
Sbjct: 861 ctttgataggtaacctaaatatgacatatgtcaaaaa 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_o06.g1 MSMg01no507_o06.g1 CHROMAT_FILE:
MSMg01no507_o06.g1 PHD_FILE: MSMg01no507_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:35 2005
         (644 letters)



>mm_chr3_11167972_11169015
          Length = 1044

 Score = 1191 bits (616), Expect = 0.0
 Identities = 637/644 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaataaaaggtcaaatataaaagtgaggatgtgaaacttacaaggttggacataacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 844 aaaaataaaaggtcaaatataaaagtgaggatgtgaaacttacaaggttagacataacag 785

                                                                       
Query: 61  aagaggtataagaaaggaaaagctgataataagcctattgccaaaggctgggagtcaagg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 784 aagaggtataagaaaggaaaagctgataatatgcctattgccaaaggctgggagtcaagg 725

                                                                       
Query: 121 ggacactatctgtagataatgccatggaaagttgaaaggtacattttatccagtactctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggacactatctgtagataatgccatggaaagttgaaaggtacattttatccagtactctc 665

                                                                       
Query: 181 cttttctgatctccacatatccctgattttaaaagcactctgtatatgcaaatttcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cttttctgatctccacatatccctgattttaaaagcactctgtatatgcaaatttcaagt 605

                                                                       
Query: 241 catattgattttctgactcagcctgattcagtgctggccttggggctgacataactaatt 300
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 catattgagttcctgactcagcctgattcagtgctggccttggggctgacataactaatt 545

                                                                       
Query: 301 tgcttatgtctgccaagtcctttactacttaatcttctgcttcccaaatgttgcgctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgcttatgtctgccaagtcctttactacttaatcttctgcttcccaaatgttgcgctcac 485

                                                                       
Query: 361 ctctcctctcaggttctctatgccttcccagaattacgccttgattaaaaactcttgtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 484 ctctcctctcaggttctctatgccttcccagaattacgccttgattaaaaactcttgtga 425

                                                                       
Query: 421 ctctttctttttccctggtgattcaaagagaataaagtaaacaagtacatttggtctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctctttctttttccctggtgattcaaagagaataaagtaaacaagtacatttggtctgcc 365

                                                                       
Query: 481 atgttcaatttgaactcctgccattcattacaaaattgtcggtctctgcaatttagaaac 540
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 364 atgttcaatttgaactcctgccattcattacaaaattgttggtctctgcaatttagaaac 305

                                                                       
Query: 541 tgtctgtgctgcaaaatttaattacattctcttcttaatttccttcttacacagctcaga 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 304 tgtctgtgctgcaaaatttaattacattctcttcttaatttccttcttacacagcttaga 245

                                                       
Query: 601 tgatctggtacatcttttcaaacattcttatcaaatttctctta 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgatctggtacatcttttcaaacattcttatcaaatttctctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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