Query= MSMg01no508_a19.b1 MSMg01no508_a19.b1 CHROMAT_FILE:
MSMg01no508_a19.b1 PHD_FILE: MSMg01no508_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:49 2005
(687 letters)
>mm_chr3_114495422_114496509
Length = 1088
Score = 1152 bits (596), Expect = 0.0
Identities = 605/608 (99%), Gaps = 1/608 (0%)
Strand = Plus / Minus
Query: 5 gaattcttctcattttctaatttttatcatgctatgggagtagaacttggtgtcgttcag 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaattcttctcattgtataatttttatcatgctatgggagtagaacttggtgtcgttcag 549
Query: 65 atgcaaggacaatctatccataagaagtataatatttgctacatctctatgccatgggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atgcaaggacaatctatccataagaagtataatatttgctacatctctatgccatgggaa 489
Query: 125 gctgttgcaagctatagccaaccattagagactctgggtgctaataatggtgcaggccac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gctgttgcaagctatagccaaccattagagactctgggtgctaataatggtgcaggccac 429
Query: 185 tcaatctagcacctagaaaattgcttgtgcaccagaaacctccaaagtataatcaataag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcaatctagcacctagaaaattgcttgtgcaccagaaacctccaaagtataatcaataag 369
Query: 245 gaaaatccttttcttctgtcacatatagccagccctctactgagaactgacacagggaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaaatccttttcttctgtcacatatagccagccctctactgagaactgacacagggaat 309
Query: 305 ttttccatctcagatccagagttccttgtgaagtgtaaatctatagatatctgctattgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttttccatctcagatccagagttccttgtgaagtgtaaatctatagatatctgctattgt 249
Query: 365 tagtattgtattc-tttttttttaaagcactggtaatccttttattttatttttgcattt 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagtattgtattcttttttttttaaagcactggtaatccttttattttatttttgcattt 189
Query: 424 tgttaatttctttatttacatttcaaatgttatcccttttcctggtttcccctaagaaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgttaatttctttatttacatttcaaatgttatcccttttcctggtttcccctaagaaaa 129
Query: 484 tcccccattccctccccttccccctgcttctatgagggtgtttcctcctggcttcctccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tcccccattccctccccttccccctgcttctatgagggtgtttcctcctggcttcctccc 69
Query: 544 acttccctatcctggaaatcccctacactgaggcatggagtcttcacaggaccaaaggcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 acttccctatcctggaaatcccctacactgaggcatggagtcttcacaggaccaaaggcc 9
Query: 604 tctcctcc 611
||||||||
Sbjct: 8 tctcctcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_a19.g1 MSMg01no508_a19.g1 CHROMAT_FILE:
MSMg01no508_a19.g1 PHD_FILE: MSMg01no508_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:49 2005
(603 letters)
>mm_chr3_114350845_114351847
Length = 1003
Score = 1127 bits (583), Expect = 0.0
Identities = 601/611 (98%), Gaps = 8/611 (1%)
Strand = Plus / Plus
Query: 1 attagaataggaatttctgtggagaagtggtctggtcaccatacgaggtgactaaggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attagaataggaatttctgtggagaagtggtctggtcaccatacgaggtgactaaggtga 254
Query: 61 gttagaatgccatgttgactcctactgactctgtttgaaaagtaagagaagcttaggcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gttagaatgccatgttgactcctactgactctgtttgaaaagtaagagaagcttaggcct 314
Query: 121 gaaaacacacacacacacacacacagagagagagagagagagagagagagagagagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaaaacacacacacacacacacacagagagagagagagagagagagagagagagagagag 374
Query: 181 agagagagagagaga------cctatgctctccttccttacataagcatacaagcaccca 234
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agagagagagagagagagagacctatgctctccttccttacataagcatacaagcaccca 434
Query: 235 tcctttcctgccatggtaaggcacatgcaatcttttggctctgccaggaaaatgcaatta 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcctttcctgccatggtaaggcacatgcaatcttttggctctgccaggaaaatgcaatta 494
Query: 295 tcaatgaagtttgccaattcattccaaactgtaagctcaaaataaaacattctctttaac 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcaatgaagtttgccaattcattccaaactgtaagctcaaaataaaacattctctttaac 554
Query: 355 ttattcagtttattctactgatattacagtataacacacacaggagagagagagagagag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttattcagtttattctactgatattacagtataacacacacaggagagagagagagagag 614
Query: 415 agagagagaga--cagagacagagacagagacagagagacagagagacagagacagagag 472
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agagagagagagacagagacagagacagagacagagagacagagagacagagacagagag 674
Query: 473 acagagacagagagacagagagacagagagacagagacagagagacagagagacagagac 532
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 675 acagagacagagagacagagagacagagatacagagacagagagacagagagacagagac 734
Query: 533 aggctggcagacaggcaggcagacaggcagacaggcagacagtgagacagaagctatagg 592
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aggcaggcagacaggcaggcagacaggcagacaggcagacagtgagacagaagctatagg 794
Query: 593 tttgaggatgc 603
|||||||||||
Sbjct: 795 tttgaggatgc 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 228
Number of extensions: 65
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 10
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
