BAC Information

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BAC

Clone NameMSMg01-508D24
Chromosome3 (Build37)
Map Location 82,104,201 - 82,104,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508D24.T7 (MSMg01no508_d24.b1)MSMg01-508D24.TJ (MSMg01no508_d24.g1)
ACCAG582207AG582208
length834800
length of high quality
(start - end)		196 (51 - 246)496 (81 - 576)
definitionCHROMAT_FILE: MSMg01no508_d24.b1 PHD_FILE: MSMg01no508_d24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:06 2005CHROMAT_FILE: MSMg01no508_d24.g1 PHD_FILE: MSMg01no508_d24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGTGGCTTTCATAAGGTATCAGCACAATGCCGCCCCCTC
TGGAGGGTCTAGGCAGAGAGGTGTCTGTGGTTTTCCCCAGTGCAGCTTTC
AGGGATCAGCTATACTGCAGCGTTGACTTCACAGACTCAGAATTCTGCAA
GGAGGTGATACTTCCCCCCACCCCGGAGGGGGGGGGGGGGGGAAGGANAN
NNNNNNNTTNNTTTTTTTTNNTTTTNTTNNTTGTTTTTTTTTTTTTTTTT
TNNNNTTTTTNNNTTNTTNNNNNNNNTTTTTTTTTTTTTTNNNTTTTTGT
TNNTTTTTTTTNTNTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTT
TNNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTNNNNNNTT
NNNNNTNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTNNTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTNTTTT
TTTTTTTNTTTTTNTTATTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TNTTTTTNTTTTTTTTTTTTTTNTTNNTTTTTTTTTTNTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTCTTTTTTTTTNNTTTATATTTTTATTNTTNATT
ATATTTAATTAAAAATATTATTTTATTTTATTAG

NTTTTGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTT
ATCATGAATGGGTGTTGAATCTTGTCAAATGCTTTTTTTGAATCTAACGA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTAGC
AAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGATC
TGAAGTTCTCTATCTTTGTTGAATCTTTCTGTGGTTTAGGTATCAGAGTA
ATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTT
GTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGA
CTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATG
GTCAACTTGATCCTGACTCANCTTTGGTACCTGGTATCTGTTCAGAAATT
TGTTCATTTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
AAAGGAACTGATGGAGTTTTTGAATTCTTTCCGGAACCGTTGGTATGTCT
CCCTTTTCTTTCCGAATTTTGTAATTAAAAATTGTCCCTGGTGCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_d24.b1 MSMg01no508_d24.b1 CHROMAT_FILE:
MSMg01no508_d24.b1 PHD_FILE: MSMg01no508_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:06 2005
         (196 letters)



>mm_chr3_82103996_82104591
          Length = 596

 Score =  267 bits (138), Expect = 3e-76
 Identities = 162/170 (95%), Gaps = 1/170 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtggctttcataaggtatcagcacaatgccgccccctctggagggtctaggc 64
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 gaattccagtggcttacataaggtatcagcacaatgccaccccctctggagggtctaggc 315

                                                                       
Query: 65  agagaggtgtctgtggttttccccagtgcagctttcagggatcagctatactgcagcgtt 124
           |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 314 agagagatatctgtggttttccccagtgcagctttcagggatcagctagactgcagcatt 255

                                                             
Query: 125 gacttcacagactcagaattctgcaaggaggtgatacttccccccacccc 174
           |||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 254 gacttcacagactcagaattctgcaaggaggtgatactgcccccc-cccc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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