BAC Information

Click to search

BAC

Clone NameMSMg01-508G22
Chromosome3 (Build37)
Map Location 60,061,033 - 60,091,034
singlet/doubletdoublet
Overlap genenone
Upstream geneP2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508G22.T7 (MSMg01no508_g22.b1)MSMg01-508G22.TJ (MSMg01no508_g22.g1)
ACCAG582347AG582348
length780797
length of high quality
(start - end)		450 (55 - 504)402 (84 - 485)
definitionCHROMAT_FILE: MSMg01no508_g22.b1 PHD_FILE: MSMg01no508_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:20 2005CHROMAT_FILE: MSMg01no508_g22.g1 PHD_FILE: MSMg01no508_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,061,033 - 60,061,478)(60,090,633 - 60,091,034)
sequence
NNNNNNNNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTCCTTCTGTTTGGCATGTCCCTCTACATAGTTTCA
TAGAAATTCTGTTTGGTACATCTCACTTTTTGTTCTTCCTATCAGAACAG
CAGCAGTTACTATGGTGCTTAACAGATGGTACAAATGGCAGCTCTAGTGT
CATCCTGGTGGCTGGCTGAGGTACCTCTGTGGAACTTGCCTGTTTACACA
TGGGATATCTATGGAGGGGTAGGTTTGCCAGGTGGTTCTCAGAGAACTAA
GTTAATTTCTGATCAGGCTGATACAACACTGAAGCAATTGTTTTTTTATC
TTGATGCAGCCCCATTTGTACCCATTGCTACTGAGGCATGAGGAAACTCA
AACTTCACAGTAAATAGATGGAAATGTGGTGACCATTGTAACAGAGCCAT
GAAAACTAAGTGGAAAATATTTGAGCTAGAATTTAAGAGATGGATAGGCT
TTTTAGTAAGGAGCTAATAAATAAAATTCTTTAGTGAAAAAGAAATAGTC
TAGGTTTTGTTTTCTAGTTGACTTTTTACCATTTGGGATTTTGGAGCCAA
AGTATCACTATTCCCTAGTCAGGCTACCAATATACTACTTCCATTGGGTA
TATACTCAAGGGAAATATTGTTGTGTGGGGGGGGGAGTTTCCCTCATCTT
TTTTTATTTTGTTTTTTATCTCAATTTCCATTTTTTGTTCTTCTTTTATT
TTCCTAACTTCTCCCTCTTTTTTTTCTCTT

NAATTTTCCCATGATATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATATTGCTTGGAATT
TTATCATAAATGATAAAATATCAATTTAAATGTGGAGATAAGTGAATAAT
CTTGAAGGAAAGAGTTCGTTGTAATTGTACCCTTTTAATCATATGATTTT
GGGCTTATTTTATACATATTCTAATAGTTCCATTTTATTGCTGCAGAAAG
ATCTACTGAAATACATATTTTGTTTTAAATTGATTTTTAAAGAAAATTTA
GCAATGCAAATTAACCACAGATCCTTACAGTTTATTCTACATGACTAAGT
AATTATTGTTATTCCATCAAATGCATCTATAGATTTTCCCCAATGAGACC
TATTAAAATAAGGCAAAAATCAGCATCCTCATGTGTGTGTGTGTTGCCAT
ATTTTTATATTTGTTTCTGGAGAATATACATTTAGAAATAGGTTATAGTG
AAAAAATATAGACAGCTTTAGGTTCAGTGGATATTTCCAATTGTTCTGGG
ATTAATACTGATCTGAATATAATCCAAGCAGTGGAACCTCTCTCTTTGGC
TCCTCAGGAACATGAGCTTAGGTTATCATTGTAAACTCATGTGTGGATGA
ATGATATANGTCCTGCCCTTCAAAGTCATGGAGTTTTCATTATTCATTCC
TGGCATNCTTTATGTACTTTGGGGNGGGATTATCTTTATAGATTACATAT
AATCTGCCTATTATTCTTTGTTTTAAATGAAAACCCCCCCTTTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_g22.b1 MSMg01no508_g22.b1 CHROMAT_FILE:
MSMg01no508_g22.b1 PHD_FILE: MSMg01no508_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:20 2005
         (450 letters)



>mm_chr3_60060829_60061678
          Length = 850

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccttctgtttggcatgtccctctacatagtttcatagaaattctgtttggta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccttctgtttggcatgtccctctacatagtttcatagaaattctgtttggta 264

                                                                       
Query: 65  catctcactttttgttcttcctatcagaacagcagcagttactatggtgcttaacagatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catctcactttttgttcttcctatcagaacagcagcagttactatggtgcttaacagatg 324

                                                                       
Query: 125 gtacaaatggcagctctagtgtcatcctggtggctggctgaggtacctctgtggaacttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacaaatggcagctctagtgtcatcctggtggctggctgaggtacctctgtggaacttg 384

                                                                       
Query: 185 cctgtttacacatgggatatctatggaggggtaggtttgccaggtggttctcagagaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgtttacacatgggatatctatggaggggtaggtttgccaggtggttctcagagaact 444

                                                                       
Query: 245 aagttaatttctgatcaggctgatacaacactgaagcaattgtttttttatcttgatgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagttaatttctgatcaggctgatacaacactgaagcaattgtttttttatcttgatgca 504

                                                                       
Query: 305 gccccatttgtacccattgctactgaggcatgaggaaactcaaacttcacagtaaataga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccccatttgtacccattgctactgaggcatgaggaaactcaaacttcacagtaaataga 564

                                                                       
Query: 365 tggaaatgtggtgaccattgtaacagagccatgaaaactaagtggaaaatatttgagcta 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaaacgtggtgaccattgtaacagagccatgaaaactaagtggaaaatatttgagcta 624

                                     
Query: 425 gaatttaagagatggataggcttttt 450
           ||||||||||||||||||||||||||
Sbjct: 625 gaatttaagagatggataggcttttt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no508_g22.g1 MSMg01no508_g22.g1 CHROMAT_FILE:
MSMg01no508_g22.g1 PHD_FILE: MSMg01no508_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:20 2005
         (402 letters)



>mm_chr3_60090433_60091234
          Length = 802

 Score =  754 bits (390), Expect = 0.0
 Identities = 399/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatattgcttggaattttatcataaatgataaaatatcaatttaaatgtggagataagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcatattgcttggaattttatcataaatgataaaatatcaatttaaatgtggagataagt 543

                                                                       
Query: 61  gaataatcttgaaggaaagagttcgttgtaattgtacccttttaatcatatgattttggg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 542 gaataatcttgaaggaaagagttcgttgtaattgaacccttttaatcatatgattttggg 483

                                                                       
Query: 121 cttattttatacatattctaatagttccattttattgctgcagaaagatctactgaaata 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cttattttatatatattctaatagttccattttattgctgcagaaagatctactgaaata 423

                                                                       
Query: 181 catattttgttttaaattgatttttaaagaaaatttagcaatgcaaattaaccacagatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 catattttgttttaaattgatttttaaagaaaatttagcaatgcaaattaaccacagatc 363

                                                                       
Query: 241 cttacagtttattctacatgactaagtaattattgttattccatcaaatgcatctataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cttacagtttattctacatgactaagtaattattgttattccatcaaatgcatctataga 303

                                                                       
Query: 301 ttttccccaatgagacctattaaaataaggcaaaaatcagcatcctcatgtgtgtgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttttccccaatgagacctattaaaataaggcaaaaatcagcatcctcatgtgtgtgtgtg 243

                                                     
Query: 361 ttgccatatttttatatttgtttctggagaatatacatttag 402
           |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgccacatttttatatttgtttctggagaatatacatttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |