BAC Information

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BAC

Clone NameMSMg01-508I08
Chromosome3 (Build37)
Map Location 19,657,317 - 19,657,724
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
Downstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508I08.T7 (MSMg01no508_i08.b1)MSMg01-508I08.TJ (MSMg01no508_i08.g1)
ACCAG582415AG582416
length768788
length of high quality
(start - end)		623 (51 - 673)409 (75 - 483)
definitionCHROMAT_FILE: MSMg01no508_i08.b1 PHD_FILE: MSMg01no508_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:27 2005CHROMAT_FILE: MSMg01no508_i08.g1 PHD_FILE: MSMg01no508_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTTTTTCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCC
TTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGAT
TCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGA
AAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATC
AAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCA
TTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTGTAGTAAAGCTTTAAGTCTGGCATGGTGATTCCGCCAGAAATT
CTTTTATCCTTGAGAAACTTTTTGCTATCCTAGGTTTTTTGTANTCCAGA
CAAAATTGCAATTGCTCC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTATCATGTCATTTTTCTAAGTTG
GCTTTAAACAATTCAGTGTGAATATAGATGGTCTTGATCTTTAAGTACTC
TCCATTTAAATATTTATTTTGTTTTAATTGATATGTCTCTGTATATGTGT
ATGTACACATGTGTGCCAATACCACAGAGGACAGAAGAGGGTTTCAGATC
ATGTGGAGCTTGAGTTACAGACAGCTGTGACCCTGCCCATGTACCTGTTG
GGGACCTAACTCTGGTCCCTTTGCAAGAATATCAAGCACTCCTAACACTC
TAAGCCATCTCATCAGCCCCAGGGACTCTCTGTCCTTAAAAGCAGGGATT
CAAGAGCTTCAAGAGGGCTCAAGGGGGGAGTGGTTCAGTAATTAAAGTCT
TTCCCAAGCAATTGTAAGGATCTGAGTCCAATNCCCAGCACCCATGGTAA
AAATCAAGTCCCATAGAAAAAAGCCAGTGGCCAAAAGGCAAAATAAGGGG
GGAATTACCCTGGGGGGCCTAATTGGGGCCCGCTTAATTCCGGGTTTCAA
AAAGAGAAAAACTTGGTCCTCAAAAATTATTGGGGGGGGAAAATTGTTGT
GTTTTATAAAAAAATTATTTTTTNNTTGAGGGAGAAAGTTTTGTTTTTTT
CTCCTCCCCCCTATAATAAAATAAAACACACCCACCAACCCCCCTCTTTN
CTCCTTCTTTTTATTTTCTTACTAAGATTTTATTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_i08.g1 MSMg01no508_i08.g1 CHROMAT_FILE:
MSMg01no508_i08.g1 PHD_FILE: MSMg01no508_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:27 2005
         (409 letters)



>mm_chr3_19657117_19657925
          Length = 809

 Score =  743 bits (384), Expect = 0.0
 Identities = 402/408 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttatcatgtcatttttctaagttggctttaaacaattcagtgtgaatatagatggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttatcatgtcatttttctaagttggctttaaacaattcagtgtgaatatagatggtct 260

                                                                       
Query: 61  tgatctttaagtactctccatttaaatatttattttgttttaattgatatgtctctgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatctttaagtactctccatttaaatatttattttgttttaattgatatgtctctgtat 320

                                                                       
Query: 121 atgtgtatgtacacatgtgtgccaataccacagaggacagaagagggtttcagatcatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atgtgtatgtacacatgtgtgccaataccacagaggacagaagagggtgtcagatcatgt 380

                                                                       
Query: 181 ggagcttgagttacagacagctgtgaccctgcccatgtacctgttggggacctaactctg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcttgagttacagagagctgtgaccctgcccatgtacctgttggggacctaactctg 440

                                                                       
Query: 241 gtccctttgcaagaatatcaagcactcctaacactctaagccatctcatcagccccaggg 300
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 441 gtccctttgcaagaatatcaagcactcctaatactccaagccatctcatcagccccaggg 500

                                                                       
Query: 301 actctctgtccttaaaagcagggattcaagagcttcaagagggctcaaggggggagtggt 360
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 actctccgtccttaaaagcagggattcaagagcttcaagagggctcaaggggggcgtggt 560

                                                           
Query: 361 tcagtaattaaagtctttcccaagcaattgtaaggatctgagtccaat 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtaattaaagtctttcccaagcaattgtaaggatctgagtccaat 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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