BAC Information

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BAC

Clone NameMSMg01-508M10
Chromosome3 (Build37)
Map Location 123,069,167 - 123,069,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d
Downstream geneG430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508M10.T7 (MSMg01no508_m10.b1)MSMg01-508M10.TJ (MSMg01no508_m10.g1)
ACCAG582609AG582610
length753865
length of high quality
(start - end)
326 (330 - 655)148 (79 - 226)
definitionCHROMAT_FILE: MSMg01no508_m10.b1 PHD_FILE: MSMg01no508_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:48 2005CHROMAT_FILE: MSMg01no508_m10.g1 PHD_FILE: MSMg01no508_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACCTATAATTTGCGGTCGCGAAACGAATCACNATTCAAAGAGGAGCCGC
GGAATTCCACATATAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGG
GGGAAAGCCTCGAAGATATGGGCACAGGAGAAAAATTCCTGAACAGAACA
TCAATGGCTTGTGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAGA
ATTGCAAAGCTTCTCTAAGACAAAAGACACTGTCAGTAAGACAAAAAGGC
CACCAACAAATTGGGAAAGGATCTTTACCAATCCTAAATGCGATAGGGGA
CTAATATCTAATATATACAATTATTTTAAGAAACTGGACTCCAGAAAGCA
TTCTTACCCCAGTGTCACAGCGGCTTTAGATCCTGTGCCTTGTCTCCATG
CTGGGCTGCAGCATGGCCCCTCGGTCCTTGTGTCCCTCAGTCCTTGTGCT
TCTCCACTGAGGCCACATTTGCTTTCACCCCCTTTCTCTTAATGGCAAAC
TCCTTTCAAATAACCAGCTTTCCACAGATGCCTCCGTCACTCTTAGTTTT
TTGGACCTTTAGCTCTTGTGAAACTCCAAATCAATCTGAACGTCCCACTA
GTCGGCTAGCACAAGTGCATTTTCCTAGGTCTGTATATGTATCTGCTGGT
CTAAATTTTCTGGCACCCACCAACCTACAGATGCTGTGCTGAGCTGCTGT
AAGGCGTCTTCATATGTTAAGGAAGCCTACAAGAGGAAGTCTGCTGCCTA
GAA
NNCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGAGAAGATGCACCTAAC
CCTCAAGAGACTGGAGGCCCCAGGAAGTTTAGAAGTCAGGTAGGGTTGGG
GGTGGGGGCATCCACGTGGAGACAGGGGGTTGGGGAGGAGGCATGGGATG
TAGATCAGTCAGAGGGTGGATGGGGGGAGNNGGGNTGGGTGGGGGGGGGG
NGTTTTTTTTTNGTGGTTTTNTGGTTTGAGTTTGGCNNTGTTGTTTAAAT
TAAAGCAAGCGAAGAGGAANTTTTTCTCTTTTTCAAACCCTTTAAGAAAA
CCCCCACCAATTTTTTTTTTCCCACCCCCCCCCTTTTCAGTGTTTGGTTT
TGGCTCTGTTTTTTTTGTTGTGGGCAACCCCCCAAATAAAAAATTAATAT
AAAAAATTCATATTTATAAATAATAATATTTTTTTACTTTTTTTTCCTTT
CATTTTCCCCACCTTTCATTACTCATTTTTTCCCACTTATTTTTCTATCC
TTTATAACACTCTTTCCTATCTCTTTATTCCCTCTTTTTTTTTCTATATC
TCTCTACTCTCCCATACTCAACTGTTTTTTTTTTCTCTTATCCTGTCCTC
TTGCTAGATTATTACCCTCCTTTTATCGTTCCCTGGTTCTATGTGTACTT
ATATTCCCGCCCCTTTATTTTTTTCTATTCGCCCGCTCTTTATTTCTCCC
ATCTTTTTTATGTTTAATTTAGTTCTCTCTTCTACCCTCGTCTTAATTAT
CATTCTAAATTATTATACGCTTGCGCACCTCGATTATTTTCTTGCGTCTT
TTTCTCTATTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_m10.b1 MSMg01no508_m10.b1 CHROMAT_FILE:
MSMg01no508_m10.b1 PHD_FILE: MSMg01no508_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:48 2005
         (326 letters)



>mm_chr3_123068879_123069604
          Length = 726

 Score =  439 bits (227), Expect = e-127
 Identities = 314/371 (84%), Gaps = 45/371 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaactggactccagaaagcattcttaccccagtgtcacagcggct-------------- 46
           |||||||||||||||||| ||||||||||||||||||||||| |||              
Sbjct: 659 gaaactggactccagaaaccattcttaccccagtgtcacagccgctgtagaagcagtgcg 600

                                                                       
Query: 47  ---------tt------agatcctgtgccttgtctccatgctgggctgcagcatggcccc 91
                    ||      ||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct: 599 gagttcgtgttggctccagatcctgtgcctagtctccacgctgggctgcagcatggtccc 540

                                                                       
Query: 92  tcggtccttgtgtccctcagtcc----------------ttgtgcttctccactgaggcc 135
           |||||||||||||||||| ||||                |||||||||| ||||||||||
Sbjct: 539 tcggtccttgtgtccctcggtccttgtgtccctcggtctttgtgcttctgcactgaggcc 480

                                                                       
Query: 136 acatttgctttcaccccctttctcttaatggcaaactcctttcaaataaccagctttcca 195
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 acacttgctttcaccccctttctcttaatggcaaactcctttcaaataaccagctttcca 420

                                                                       
Query: 196 cagatgcctccgtcactcttagttttttggacctttagctcttgtgaaactccaaatcaa 255
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 419 cagatgcctccgtcactcttagttttttggaccttcagctcttgtgaaactccaagtcaa 360

                                                                       
Query: 256 tctgaacgtcccactagtcggctagcacaagtgcattttcctaggtctgtatatgtatct 315
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tccgagcgtcccactagtcggctagcacaagtgcattttcctaggtctgtatatgtatct 300

                      
Query: 316 gctggtctaaa 326
           |||||||||||
Sbjct: 299 gctggtctaaa 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)