Query= MSMg01no508_p02.b1 MSMg01no508_p02.b1 CHROMAT_FILE:
MSMg01no508_p02.b1 PHD_FILE: MSMg01no508_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:02 2005
(707 letters)
>mm_chr3_81963757_81964865
Length = 1109
Score = 1224 bits (633), Expect = 0.0
Identities = 683/701 (97%), Gaps = 4/701 (0%)
Strand = Plus / Plus
Query: 6 gaattctctttttcctctgggtgacgttaactgttttctgggttttgtcatcactgcggt 65
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctttctcctctgggtgacgttaactgttttctgggttttgtcatcactgcggt 265
Query: 66 gacaactctatataatttaagctttgttaactgccatttgtttaataagagac---tttt 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 266 gacaactctatataatttaagctttgttaactgcca-ttgtttaataagagacttttttt 324
Query: 123 ttatgtttataccactttacctttattagcatagactcttagatggagacattgtaggct 182
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatgtttgcaccactttacctttattagcatagactcttagatggagacattgtaggct 384
Query: 183 ggaatgcagttttaaaacttatttggcctacttatcctttacactgagaaaatagtcact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaatgcagttttaaaacttatttggcctacttatcctttacactgagaaaatagtcact 444
Query: 243 atatttttggcacttacttttatggcaaagaaatgtttatgaagacagttttgtcagatc 302
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatttttggcacttacttttacggcaaagaaatgtttatgaagacagttttgtcagatc 504
Query: 303 attgacagattagtgataaagaatgagcaagtgcatgtgtgcttcttgcccttgagagga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attgacagattagtgataaagaatgagcaagtgcatgtgtgcttcttgcccttgagagga 564
Query: 363 tgtcagattccctgctgtatcattctctgcctcattccaataagagacattttaaagaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcagattccctgctgtatcattctctgcctcattccaataagagacattttaaagaga 624
Query: 423 cccttacactcctgtcttcagctatcagactattgaaacaatggacagaagaattagaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cccttacactcctgtcttcagctatcagactattgaaacaatggacagaagaattagaat 684
Query: 483 ttccttaagaaggaaagggacctgctgaaggtggcagccaggaaaaatacttgcatccaa 542
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttccttaggaaggaaagggacctgctgaaggtggcagccaggaaaaatacttgcatccaa 744
Query: 543 ggaacagattccacggagttccgaaaatttatgagattatcttgaaggagagacaggagc 602
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 ggaacagactccacggagttccgaaaacttatgagattatcttgaaggagagacaggagg 804
Query: 603 tgtgataagcagagatggaccacacctgggtaaggacaattagttacaaagcctcttgcc 662
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 805 tgtgaaaaccagagatggaccacacctgggtaaggacaattagttacagagcctcttgcc 864
Query: 663 ctttctttaacaaaaactcaagtcagtagcatcagcatcac 703
|||||||||||| || |||||||||||| ||||||||||||
Sbjct: 865 ctttctttaacacaagctcaagtcagtatcatcagcatcac 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1109
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1099
Effective search space: 766003
Effective search space used: 766003
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no508_p02.g1 MSMg01no508_p02.g1 CHROMAT_FILE:
MSMg01no508_p02.g1 PHD_FILE: MSMg01no508_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:02 2005
(246 letters)
>mm_chr3_82115299_82115944
Length = 646
Score = 451 bits (233), Expect = e-131
Identities = 242/245 (98%)
Strand = Plus / Minus
Query: 1 ctctctctagagctcagatatcgctggtggattctgaactagaatccaatccagagttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctctctagagctcagatatcgctggtggattctgaactagaatccaatccagagttac 386
Query: 61 tacatctccactccattttaggacaatgaattattcaagtgacagataacgtgtgtaaag 120
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tacatctcgactccattttaggacaatgaattattcaagtgacagataacatgtgtaaag 326
Query: 121 agtgcccttcacagttatgaagggaaaggaaagggcttgagaatatgctactctggcttc 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgcccttcacagttacgaagggaaaggaaagggcttgagaatatgctactctggcttc 266
Query: 181 tgtctcaattttagctaccactactacatgcttgatctaatcaaagtgtgtattttcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtctcaattttagctaccactactacatgcttgatctaatcaaagtgtgtattttcttc 206
Query: 241 aagga 245
|||||
Sbjct: 205 aagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
