Query= MSMg01no509_b21.b1 MSMg01no509_b21.b1 CHROMAT_FILE:
MSMg01no509_b21.b1 PHD_FILE: MSMg01no509_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:15 2005
(564 letters)
>mm_chr10_13307524_13308484
Length = 961
Score = 1025 bits (530), Expect = 0.0
Identities = 555/564 (98%), Gaps = 3/564 (0%)
Strand = Plus / Minus
Query: 1 agcgtgttagtgtaactcctctgattttatatataataggctggagaggagcatctgagc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 761 agcgtgttagtgtaactcctctgattttatatatgataggctggagaggagcatctgagc 702
Query: 61 ctgctttgcttgtatggggaggagaggtgggaaaacacactgtgttggaggggaggaggg 120
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct: 701 ctgctttgcttgtatggggaggagaggtgggaaaacaca--gtgttggacgggagga-gg 645
Query: 121 ggaatggtggagccccacaggccaggagttgggtgggggtgaggcaaaagccacagctta 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 644 ggattggtggagccccacaggccaggagttgggtgggggtgaggcaaaagccacagctga 585
Query: 181 tggccaagccagaagtcctcacttaacactcagaactagagtgttttaaaatctgaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tggccaagccagaagtcctcacttaacactcagaactagagtgttttaaaatctgaattt 525
Query: 241 ttaattcctccactgtctccacttacagccacagagctttagaaagctctctggcaagga 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 524 ttaattcctccactgtctccacttacagccacagagctttagcaagctctctggcaagga 465
Query: 301 catcgcgctgaagagtatttgagggaaggaacccttcatcatctccccaagggctgaaat 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cattgcgctgaagagtatttgagggaaggaacccttcatcatctccccaagggctgaaat 405
Query: 361 aacccaaatgtgaggatttgcatcactctccctgctatgcaaatcagagagaagcctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacccaaatgtgaggatttgcatcactctccctgctatgcaaatcagagagaagcctgct 345
Query: 421 gggtgcccttgtttattttggtaaatgtgtgggcagttgaagggaaaggggctgtttaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gggtgcccttgtttattttggtaaatgtgtgggcagttgaagggaaaggggctgtttaaa 285
Query: 481 atgtatgtgaaacttttagtttcaagatgttaaactctgcaagaagcaacttagattcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atgtatgtgaaacttttagtttcaagatgttaaactctgcaagaagcaacttagattcct 225
Query: 541 cgggaataaaataaaaccttactt 564
||||||||||||||||||||||||
Sbjct: 224 cgggaataaaataaaaccttactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 961
Length adjustment: 10
Effective length of query: 554
Effective length of database: 951
Effective search space: 526854
Effective search space used: 526854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_b21.g1 MSMg01no509_b21.g1 CHROMAT_FILE:
MSMg01no509_b21.g1 PHD_FILE: MSMg01no509_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:16 2005
(454 letters)
>mm_chr3_60397560_60398413
Length = 854
Score = 706 bits (365), Expect = 0.0
Identities = 410/451 (90%), Gaps = 41/451 (9%)
Strand = Plus / Plus
Query: 1 tacttccctttgatatgcatttaagctgtgttccagggatgtgcttatagtgttagtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacttccctttgatatgcatttaagctgtgttccagggatgtgcttatagtgttagtgtc 260
Query: 61 ttatgcagtttgtagggggagggtgtttataaccttcgtgtcttatgcagtttgcagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgcagtttgtagggggagggtgtttataaccttcgtgtcttatgcagtttgcagagc 320
Query: 121 tgatggctctataaactgggggatttaggcatcaggacatgaccactctggggtaagctt 180
||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatggctctataaactgggggatttaggcatcaggac---------------------- 358
Query: 181 ttgtggtaatataagagagggtacagccagaggcatctggaagagtccagagcagggaga 240
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 359 -tgt------------------acagccagaggcatctggaagagtccagagcagggaga 399
Query: 241 gaaagtagtaggagggtgaacatggccagcagactagagttgtcagtgaggtgagtcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaagtagtaggagggtgaacatggccagcagactagagttgtcagtgaggtgagtcagg 459
Query: 301 agccagagaggagggcaaacagggtgtggacaaaggaggccaagagaggaaaacaagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agccagagaggagggcaaacagggtgtggacaaaggaggccaagagaggaaaacaagaga 519
Query: 361 gagacaaaagactgagagcaaagagggtgcatggccaagatggcagggttatgtggggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gagacaaaagactgagagcaaagagggtgcatggccaagatggcagggttatgtggggaa 579
Query: 421 agaagttggcggggtgggatggggagggaaa 451
|||||||||||||||||||||||||||||||
Sbjct: 580 agaagttggcggggtgggatggggagggaaa 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
