Query= MSMg01no509_e24.b1 MSMg01no509_e24.b1 CHROMAT_FILE:
MSMg01no509_e24.b1 PHD_FILE: MSMg01no509_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:31 2005
(660 letters)
>mm_chr3_102281684_102282743
Length = 1060
Score = 1214 bits (628), Expect = 0.0
Identities = 651/660 (98%), Gaps = 3/660 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttaggaattacaaaaa---tcacaaatctggatttttgcgtgaggacatcaca 60
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcttaggaataaaaaaaaaaatcacaaatctggatttttgcgtgaggacatcaca 260
Query: 61 ggaacatgttttctcaattactgagcacatttctgaagtgaagtcaccagccctcagctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacatgttttctcaattactgagcacatttctgaagtgaagtcaccagccctcagctc 320
Query: 121 atcaggattggctctccgctcggccacacctgacctggactgggctttcccttacccaaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaggattggctctcccctcggccacacctgacctggactgggctttcccttacccaaa 380
Query: 181 gctgattcagccaacccaagccactgccccaggaccagacagactcatccccaagtccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgattcagccaacccaagccactgccccaggaccagacagactcatccccaagtccta 440
Query: 241 agccagggtgggaagcacaccccctaatagcagcccaatttcagatcctaagaattaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccagggtgggaagcacaccccctaatagcagcccaatttcagatcctaagaattaaga 500
Query: 301 gggacaattttattgttgcagtaaggggcagaaccccacaagccctgggatccgtttgtc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 501 gggacaattttattgttgcagtaaggggcagaaccccacaagccctggcatccatttgtc 560
Query: 361 cttagcatttattgttagatggtgaccacacgtggcctgatagagcagatgagttcttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagcatttattgttagatggtgaccacacgtggcctgatagagcagatgagttcttta 620
Query: 421 gtttctgaatgagaggaaatagtctcttttgcagaaaaacatgcaccgactgcctaaaat 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 gtttctgaatgagaggaaatagtctcttttgcagaaaaacacgcaccgactgcctaaaat 680
Query: 481 atcacccgctggggcccgcgagcagcagttgtgtcctctggatgatttcctgggctgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcacccgctggggcccgcgagcagcagttgtgtcctctggatgatttcctgggctgagt 740
Query: 541 cctctccaagcagtggctctttgtcagatatttctaatttctgagatattttattaatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctctccaagcagtggctctttgtcagatatttctaatttctgagatattttattaatga 800
Query: 601 tgtccctttggcagagggatgctcagagtacacaattagcagtgtgcctcagcgcaagac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtccctttggcagagggatgctcagagtacacaattagcagtgtgcctcagcgcaagac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_e24.g1 MSMg01no509_e24.g1 CHROMAT_FILE:
MSMg01no509_e24.g1 PHD_FILE: MSMg01no509_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:31 2005
(550 letters)
>mm_chr3_102442354_102443299
Length = 946
Score = 1021 bits (528), Expect = 0.0
Identities = 543/550 (98%), Gaps = 4/550 (0%)
Strand = Plus / Minus
Query: 1 aagttggcatctcagtgatggtgtacttgtgcatcagctcacccacagtttaatgattcc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 746 aagttggcatctcagtgatggtgtacttgtgcatcagctcacccatagtttaatgattcc 687
Query: 61 tgcatctttgaccttctgagctcagtttccttggcctagatgtacccctctccccccatc 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 686 tgcatctttgaccttctgagctcagtttccttggcctagatgtgcccctctccccccatc 627
Query: 121 tgtgtatccatctttaaaggcattttatgtcttctctaccccatgaagcttgtccaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtgtatccatctttaaaggcattttatgtcttctctaccccatgaagcttgtccaggct 567
Query: 181 ggatgtgtagcaaattctctctaagagtttgattcttctctatttgcttctcaccaggct 240
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 566 ggatgtgtagcaaattctctctaagagtttgattcttctc----tgcttctcaccaggct 511
Query: 241 cttgggatccttagcactagccctgatctctggtttccatcccccttatatctgctccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cttgggatccttagcactagccctgatctctggtttccatcccccttatatctgctccac 451
Query: 301 gatcattgccctgtgatcactaccctctcatggctaagtttctcctgaccattcagaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatcattgccctgtgatcactaccctctcatggctaagtttctcctgaccattcagaggt 391
Query: 361 agcctctaactgctgctgggctcttctgctcaaatccttcctctactgggttccagacgg 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 390 agcctctaactgctgctgggctcttctgctcaaatccatcctctactgggttccagacgg 331
Query: 421 tatgctgaaaatgccagcccagcttctttaactcctaccttcccagcttcaaattcctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatgctgaaaatgccagcccagcttctttaactcctaccttcccagcttcaaattcctcc 271
Query: 481 ttgctttctggataaggtacacaaaattttgctcagctctagattccactttgctatggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgctttctggataaggtacacaaaattttgctcagctctagattccactttgctatggc 211
Query: 541 aaaacacagc 550
||||||||||
Sbjct: 210 aaaacacagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 946
Length adjustment: 10
Effective length of query: 540
Effective length of database: 936
Effective search space: 505440
Effective search space used: 505440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
