BAC Information

Click to search

BAC

Clone NameMSMg01-509F16
Chromosome3 (Build37)
Map Location 93,326,807 - 93,327,374
singlet/doubletsinglet
Overlap geneS100a11
Upstream geneLOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1
Downstream geneS100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509F16.T7 (MSMg01no509_f16.b1)MSMg01-509F16.TJ (MSMg01no509_f16.g1)
ACCAG583051AG583052
length760781
length of high quality
(start - end)		558 (69 - 626)588 (76 - 663)
definitionCHROMAT_FILE: MSMg01no509_f16.b1 PHD_FILE: MSMg01no509_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:34 2005CHROMAT_FILE: MSMg01no509_f16.g1 PHD_FILE: MSMg01no509_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTGTTACAAAAGCAGAGTCCGGCACAGAACTTGAATGATGCTC
TTCCTGGTGCAACCACAGCTTTGGTTTAACTCTGTGTTAAGACATTCCAG
CCACCATTCCTTTGGAAATGAGTGGCGTTTGGATGAAACAAAGGCAGAAC
TCTGTAGAAAGGAACCTTGTAGCGGAGAGCCTAGGGGTGACGCTACCCTG
ATAGTTGCCCTCTCATGCCTTAGTTCTGCACAAGTAAAATTAGTGACGTC
TAGCTTTCTGCTTTACACATACACAATAAATCTATAGTTTCACTAGGTAG
CCCAGGTTAACCCAAACTCTTGATCCTCCAAGGGTATATGCACCCCCACA
CCTTGCTGAATATACTTTCGAACGTCTAAAATGTCCTCTCTCCCCCCCCA
GTGCACGATTACAGATGTGCTGTTCATTTTCTTCAGAGAAATTCATGAGA
ATTACTTTAGGGCATCTCCTTCAATCACAGTAGCCTCTTGTGGAATAGGT
CACTCACTGTAATCTCCCTCCAAAGTTCAGAACATGTGTGTGCAGATTCC
TATAGTCATATGAACAGATTATTCATATGTTTTCTCACACTGTCTAAGAA
TATCAGAAAAGTTCTCCCTTGTCTGAGTCATCTAGTGTTTCTAAGCACTC
GGAGTTCCGTGTGGAATACCTTACTGCATGCACTGAAGCTATCAAAAGGA
AGCTCACAGN

CCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGGTGCTCAACCTGAGATCCA
GACTGCCAAGATTTCCTTTGATCAATTTGTTTCCAAAACATTTAAGAGGA
GCCTGACACCTTCACCCCAAAAGGAAACTGTTACAGCATATATGATGATA
CTGTTTAGCCCAAATTGTGTTATGTACTTAAAATAAAATAACTGGTTTTA
GTCGTAGAGTGACTCAGCTTTGGTACACACCTTTAGTCCTTCTGGCTGGA
ATATAGACATACCTTTAAGTACACACCTTTAATTCCAAACACTGAAGGTA
AAGCTAGTTTGTAGAAAGAAGCCCCAGCAGGGTGGTGGTAGTGCACGACT
TTAATCCCAGCCCTTGGAAGGCAGGGGGAGGCGGATTTCTGAGTTTGAGG
CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA
AACCCTGTCTCGAAAAAAAAAAAGAAGAAGAAGAAGAGAAAGAAAGAAGG
AAAGAAAGAAAGACAGAAAGAAATCCCAATGTGCAGAGAAACTAAGAATT
CAGAGAAAGATTAGGCAGAAATGGATATACTCAACTGTTATGAGAAGAGA
GAGGAAAGAGAAGAGCTCTCTGCAGAGAGAAAGGGCAGAGAGAAAGGGCA
GAGAGAAAGGTAGATAGGACAGTTTTAGCACGACAGAGGTATAGAGTCTG
GTTGAAGAGAGAACAAAAGCAGAAAGTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_f16.b1 MSMg01no509_f16.b1 CHROMAT_FILE:
MSMg01no509_f16.b1 PHD_FILE: MSMg01no509_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:34 2005
         (558 letters)



>mm_chr3_93326617_93327574
          Length = 958

 Score = 1033 bits (534), Expect = 0.0
 Identities = 555/568 (97%), Gaps = 10/568 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagagtccggcacagaacttgaatgatgctcttcctggtgcaaccacagctttggttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gcagagtccggcacagaacttgaatgatgctcttcctggtgcaaccacagctttggttta 250

                                                                       
Query: 61  actctgtgttaagacattccagccaccattcctttggaaatgagtggcgtttggatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actctgtgttaagacattccagccaccattcctttggaaatgagtggcgtttggatgaaa 310

                                                                       
Query: 121 caaaggcagaactctgtagaaaggaaccttgtagcggagagcctaggggtgacgctaccc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 311 caaaggcagaactctgtagaaaggaaccttgtagccgagagcctaggggtgacgctaccc 370

                                                                       
Query: 181 tgatagttgccctctcatgccttagttctgcacaagtaaaattagtgacgtctagctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgatagttgccctctcatgccttagttctgcacaagtaaaattagtgacgtctagctttc 430

                                                                       
Query: 241 tgctttacacatacacaataaatctatagtttcactaggtagcccaggttaacccaaact 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgctttacacacacacaataaatctatagtttcactaggtagcccaggttaacccaaact 490

                                                                       
Query: 301 cttgatcctccaagggtatatgcacccccacaccttgctgaatatactttcgaacgtcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttgatcctccaagggtatatgcacccccacaccttgctgaatatactttcgaacgtcta 550

                                                                       
Query: 361 aaatgtcctctctcc----------ccccccagtgcacgattacagatgtgctgttcatt 410
           |||||||||||||||          |||||||||||||||||||||||||||||||||||
Sbjct: 551 aaatgtcctctctcctcccccccccccccccagtgcacgattacagatgtgctgttcatt 610

                                                                       
Query: 411 ttcttcagagaaattcatgagaattactttagggcatctccttcaatcacagtagcctct 470
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 611 ttcttcagagaaattcatgagaattactttagggcatctcattcaatcacagtagcctct 670

                                                                       
Query: 471 tgtggaataggtcactcactgtaatctccctccaaagttcagaacatgtgtgtgcagatt 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgtggaataggtcactcactgtaatctccctccaaagttcagaacatgtgtgtgcagatt 730

                                       
Query: 531 cctatagtcatatgaacagattattcat 558
           ||||||||||||||||||||||||||||
Sbjct: 731 cctatagtcatatgaacagattattcat 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |