BAC Information

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BAC

Clone NameMSMg01-509K05
Chromosome3 (Build37)
Map Location 146,959,254 - 147,126,136
singlet/doubletdoublet
Overlap genenone
Upstream geneSsx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509K05.T7 (MSMg01no509_k05.b1)MSMg01-509K05.TJ (MSMg01no509_k05.g1)
ACCAG583267AG583268
length745756
length of high quality
(start - end)
324 (331 - 654)334 (333 - 666)
definitionCHROMAT_FILE: MSMg01no509_k05.b1 PHD_FILE: MSMg01no509_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:56 2005CHROMAT_FILE: MSMg01no509_k05.g1 PHD_FILE: MSMg01no509_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,125,815 - 147,126,136)(146,959,254 - 146,959,587)
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGAGAGGATG
CGCGGAATTCAATATCGTACTTTAATATGAGGAACATGAAAAATGATATG
CACTAAAACATGTTACCTATTCACTATGTAAGTATATGGATAGTTTTCCC
TTACTGTTTTTGAAATAATGATTTTCCTAGTGGATAGTGAAATGTATCTA
AAGAGTATTTTTTAAGTTTTGTGGTTTGGTATTGAAGTTGAAAGAGAACA
TTGGTGTTGATAGTACCCATTAATAAATGTAGAACTAACTGAGGAAATGT
TAAATCAGAGGAATTAAAACATTTATTTTTCTGGGCAGTGGGGCACATGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAAACCCTGTCTCAAAAAACAAACAAACAAGCAAACAAACCAACAAACCA
ACAACAACAAAAATACAATGATAAATTACAGGCAGTGCCCCCACCAACTA
GTTACTGAAGAGCCAGAAAAAAACAAAGAGTTTGATGGAACAAGAGAATT
TCCAGACAATTACTACTGGTGTAGACCACATGACAACTAAGATACTGAAT
TGTATTGTTTTATCCAGAGCGAAGACAATGTCTTCCTTTGAATTTTGGCT
ATTTAGGGACTCAGACAAATACTTTACTGTGTCCATGCTCAAATA
NNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACCCGAAACAATCTGTATAATCAGGGACCCATT
AGCACAATAATAGTATTTATTAAATTTGTTTTTATTTAAAATTATTTAAT
TTTGGAAAAAGTCCTATCCTTTGAAGTGAAATGTCCACTCCATTTTTAAC
AGAGACAGAGATGTCTAACAGCATGCCTAAAGTCACACAGCCAAGTGCAC
ACTTGCCACATAATCTAAGCCCCTGGGTCGCTAGCTGTGCTCTTCACTCC
TGTGCTGTGCCTTTCCTAATCTATTTTGTTTAGAGGATTTCCTGTTCCAT
CTAGAGTGGACATTGGTCAGAGACCATGTCCTAAAGGACAGATATGGTCT
TGTCTACCAGTAGTTGCTGATTTGTGAGAGGTGCGTGTGGCGGACAGGGG
TTGAGAGAGGCTTTGGTGGATGACTGTGTAGTCTAGAAGCTCTTCTTTAG
CCGTTCTCATCTCACCTAAGGCTACATGGTTTGTAGCACATGTTAGGCAG
ACAGACATGTTCCTGGTCTGTTTGCTCCTGTACATTGTCAAAGGTGAGGG
AAGTCAAGGAGACATCTTATAGGGTGTTCTGGGGGCCCAGCCCATACCTT
ACAGGGTGTCCCAGGAGTCTCGCCCACACCCCACAGTGTGTCTCTGGGAG
TTCAGTCCTATGCATATATTTTGGGCTTCAATCCCTTATGTGCTATTCCT
CACGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_k05.b1 MSMg01no509_k05.b1 CHROMAT_FILE:
MSMg01no509_k05.b1 PHD_FILE: MSMg01no509_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:56 2005
         (324 letters)



>mm_chr3_147125433_147126156
          Length = 724

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggcagtggggcacatgcctttaatcccagcacttgggaggcagaggcaggcagattt 60
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 704 ctgggcagtggggcacacgcctttaatccgagcacttgggaggcagaggcaggcagattt 645

                                                                       
Query: 61  ctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacaga 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctgcgttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacaga 585

                                                                       
Query: 121 gaaaccctgtctcaaaaaacaaacaaacaagcaaacaaaccaacaaaccaacaacaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaaaccctgtctcaaaaaacaaacaaacaagcaaacaaaccaacaaaccaacaacaacaa 525

                                                                       
Query: 181 aaatacaatgataaattacaggcagtgcccccaccaactagttactgaagagccagaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 aaatacaatgataaattacaggcagtgcccccaccaactagttactgaagagccaggaaa 465

                                                                       
Query: 241 aaacaaagagtttgatggaacaagagaatttccagacaattactactggtgtagaccaca 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaacaaacagtttgatggaacaagagaatttccagacaattactactggtgtagaccaca 405

                                 
Query: 301 tgacaactaagatactgaattg 322
           ||||||| ||||||||||||||
Sbjct: 404 tgacaacaaagatactgaattg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no509_k05.g1 MSMg01no509_k05.g1 CHROMAT_FILE:
MSMg01no509_k05.g1 PHD_FILE: MSMg01no509_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:56 2005
         (334 letters)



>mm_chr3_146959054_146959787
          Length = 734

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggatttcctgttccatctagagtggacattggtcagagaccatgtcctaaaggacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggatttcctgttccatctagagtggacattggtcagagaccatgtcctaaaggacaga 260

                                                                       
Query: 61  tatggtcttgtctaccagtagttgctgatttgtgagaggtgcgtgtggcggacaggggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggtcttgtctaccagtagttgctgatttgtgagaggtgcgtgtggcggacaggggtt 320

                                                                       
Query: 121 gagagaggctttggtggatgactgtgtagtctagaagctcttctttagccgttctcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagaggctttggtggatgactgtgtagtctagaagctcttctttagccgttctcatct 380

                                                                       
Query: 181 cacctaaggctacatggtttgtagcacatgttaggcagacagacatgttcctggtctgtt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctaaggctacatggtttgtagaacatgttaggcagacagacatgttcctggtctgtt 440

                                                                       
Query: 241 tgctcctgtacattgtcaaaggtgagggaagtcaaggagacatcttatagggtgttctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcctgtacattgtcaaaggtgagggaagtcaaggagacatcttatagggtgttctgg 500

                                             
Query: 301 gggcccagcccataccttacagggtgtcccagga 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcccagcccataccttacagggtgtcccagga 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)