BAC Information

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BAC

Clone NameMSMg01-509M06
Chromosome3 (Build37)
Map Location 27,686,580 - 27,686,902
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
Downstream geneE030011K20Rik, Pld1, Tnik, Slc2a2, EG624446, Eif5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M06.T7 (MSMg01no509_m06.b1)MSMg01-509M06.TJ (MSMg01no509_m06.g1)
ACCAG583364AG583365
length1,098756
length of high quality
(start - end)
---327 (328 - 654)
definitionCHROMAT_FILE: MSMg01no509_m06.b1 PHD_FILE: MSMg01no509_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:07 2005CHROMAT_FILE: MSMg01no509_m06.g1 PHD_FILE: MSMg01no509_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATAATTTTGCNGTCTGCTAANNNNANTTCCCTTATTTCGGTATCTGA
TGGGGNNCGGAAGTCGGGTGGTTGTTTCTCACNCACCCTTTCCAAAAGNG
GGGGAGNAAAAAAAAAACAAAATGGGNTGGGGTANGNCANNAATGATTGT
GAAACATCAANCTTGGGGCTGCCCTTCTTTTACTGGTGTTTTGTNGGGGA
AACTTGTTTCTTNNNAANCAANGCTTGGGGAACAGGAACAAAAAATCCTA
TCCTCTTGGCTCCGGGAAAAAACCTCTAATTGGCTTCCTTCTTTGGGGAA
AACCTTTACCCCNNTTTTGTGTTTGGGGTTTTTTTGTTTTTTTTTTAAAA
AGGGAAAAAAAAAAAAAAAAATAACCCTCTCCCCCCCAAAAACCCACATT
TTGATTTTTTTTTTTTGGCCCCAANNNCCCCTTTTTTTTTATTTTCCCCC
NNGGNNNNNAAACCCCCCCCCTCTAAAAAAAAAAAAAATTTTTGAAGGGC
CCTCCCCTCTTTTAAAAAAAATTTTTTCTCCCCCCGGGGGGGGGGGAAAA
GGGGGTGGGGGGGGCCCCCCCCCCTCCTTTNGGGGAAGAAAAATTTTCCT
TCCCTCCTCCCTCGNGGTTATTTTTTCTCTAAAAAAATTTTTTTTTTTTC
CCCTCTCTTGCGGGCATTATTTATATAAAAAAATATTTTTTTCTTTCCTC
CACAAACAACCCCCCCCCCCCCATAAAAATAAATTTCTTTCTCCCTTTTN
CCCTTCCCCCTAAGACACCCCCCCCCAACAACAAAAAAAAAAAAAACTCT
TTCTTCTTTNNTTTTTTTATTNNTATATAACACCTCCCCCTTTTCTTCTC
TCTTTTTCCTCTCCCCTCTTANNNNNTNTTTTCTTTTCTTCTTTTTTCCC
NATNNTNTTCNNNNNNNNNNCCACTTTTTTNNTTTCTCTCTCTTTATTAA
AAAAAAAAAAATATCTANTAATTTATTCTTTTTTCTCTTTTTCTCTTTCC
TTNTCNNNTCCATCCATCTTCACATATACCCTTTCTTTCTCCCCNCNCTC
TCTCTTCTTTNTNTTNCCTTCCAATNAAAGTGAGTAATGGGGAGGGGG
NATCATTGAANGNGTAGGCCGGGNGGNCGCCTGGTCGNCACTTGGGGGNG
AACTATAGAAGTTGCTACACCAGGGGTGGCAGTTCTTAGTACCAGAAGCC
CTCCCCGTACAGAGAATAGGACATTCCTTAGACTTCTGGAAAATGCAGAG
TGCAAATGAAGGGCTCTGTTAATAGATGTGTGTTACCATTCTATTTCCCT
AAAAAAAAGAAAAAAAGCGCACACACAGATGGGTATGGAAGCCCCTTATC
TATTTTTATCCAAGTAGGCCGGGCTGGCTGTTCAATGAGTCCCAGAAATC
TACTGCCTTTCCCCGATTCCCTCCATTCTAAGATTACAGGTTCACACTAC
AGCACACAGCTTTTTTTTTTCCCTTTTGGATCCTAGAAGTCAAACTCAGG
CCCTGAGTCACCCCCCCACTCCCTAATTATTGTCTTTAATGAGTCAGTCT
TCACTAGGAATCCTTTAAAAGTGAAAATTTGTTATTTAGTGTTGTTAGGG
AATCATTTATTCTGTCACTCATGTGGAGGTGGGGCCCACATGCTCTGTGC
ACATGTGGAGCTCAGAGGGCAAGTTGCAAGAATCAACTCTCTCTGCCCAC
CTTTATGTCTTGTTTTCAAACTTTCGCAGCAAATGCCTTTAAGCCAGTAA
GCTGTATCTCTGACCAGTTCCCCTGCTTGCTTGTTTGTTTGCTTGCTTTA
ATTAGATTAATAAAATTATCTCTTAGATCAAAAAACTCTTTAAGTATCAT
TCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m06.g1 MSMg01no509_m06.g1 CHROMAT_FILE:
MSMg01no509_m06.g1 PHD_FILE: MSMg01no509_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:07 2005
         (327 letters)



>mm_chr3_27686380_27687102
          Length = 723

 Score =  528 bits (273), Expect = e-154
 Identities = 312/327 (95%), Gaps = 4/327 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagattacaggttcacactacagcacacagcttttttttttcccttttggatcctaga 60
           ||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 523 ctaaggttacaggttcacactacagcacacagc----ttttttcccttttggatcctaga 468

                                                                       
Query: 61  agtcaaactcaggccctgagtcacccccccactccctaattattgtctttaatgagtcag 120
           ||||||| ||||||||||||||||| | | | ||||||||||||||||||||||||||| 
Sbjct: 467 agtcaaattcaggccctgagtcacctctctagtccctaattattgtctttaatgagtcaa 408

                                                                       
Query: 121 tcttcactaggaatcctttaaaagtgaaaatttgttatttagtgttgttagggaatcatt 180
           ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 407 tcttcactaggaatcttttaaaagtgaaaattcattatttagtgttgttagggaatcatt 348

                                                                       
Query: 181 tattctgtcactcatgtggaggtggggcccacatgctctgtgcacatgtggagctcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tattctgtcactcatgtggaggtggggcccacatgctctgtgcacatgtggagctcagag 288

                                                                       
Query: 241 ggcaagttgcaagaatcaactctctctgcccacctttatgtcttgttttcaaactttcgc 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 287 ggcaagttgcaagaatcaactctctctgtccacctttatgtcttgttttcaaactttcgc 228

                                      
Query: 301 agcaaatgcctttaagccagtaagctg 327
           |||||||||||||||||||||||||||
Sbjct: 227 agcaaatgcctttaagccagtaagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 723
Length adjustment: 9
Effective length of query: 318
Effective length of database: 714
Effective search space:   227052
Effective search space used:   227052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)