BAC Information

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BAC

Clone NameMSMg01-509N13
Chromosome3 (Build37)
Map Location 60,881,596 - 60,882,167
singlet/doubletsinglet
Overlap genenone
Upstream geneSucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509N13.T7 (MSMg01no509_n13.b1)MSMg01-509N13.TJ (MSMg01no509_n13.g1)
ACCAG583424AG583425
length751761
length of high quality
(start - end)
572 (74 - 645)318 (323 - 640)
definitionCHROMAT_FILE: MSMg01no509_n13.b1 PHD_FILE: MSMg01no509_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:13 2005CHROMAT_FILE: MSMg01no509_n13.g1 PHD_FILE: MSMg01no509_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCAAAATTTGCGGCCGGNAAANGATTCACATTTCAAAATCGTCCGCGGA
ATTCTACACTCCCTCTAGAAGGGACTAGGAGAAGACTGGCTCCCTCATGG
TTAGGAAGAGGGTCTCAAAACATGCCAAAACGGAAACATGGCAGCATCCA
GACAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATGAAGGCTACTAGC
AGAATACTGACTTCCCAACAGCTAGGATGAGGATATTAAAGCCCACATTC
ACAGTGACACACCTACTCCAACAAGGCTACACCTCCTAGTAGTGCTTCTC
CCTGGGCCAAGCTNATTCACTAAATCACACGTAATAAGCTGTTTCTATTT
CAATTAATAACCATGTGGTCTTGGTATTATGTTTTGCTTTATGTTTTGCC
ATACAACCTGATATGATAAGCCCTTTGAGCTCAGATCCACAGCTTACCAC
TCTTTTTTTTTTAATTAGGTATTTTCCTCATTTACATTTCCAATACTATC
CAAAAAGTCCCCAATACACTCCCCACCCCCCAGTCCGCTACCCACCCACT
CCCACTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTGTC
GGCATCTCTTTCCAGTGATGGCCGACAAGACCATCTTTTGATACATATGC
AGCTAAAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCA
CCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACATTCTCTAGCTCC
T
CAATGACTGTGGGTAGGNNGGGAGGNCGCCGTCAAAACTCACGTTTAGGT
GAACTATAGTTGCAAACACGGAATTCCTTGGTGCAGCAAGGGTTGATGGG
CAATGTTCATGCAGGGAGCATCTGTGAGTGGATGCACCTCTTGATAAAGT
CTATCACTTTATTTCCACTCTGATTCCATCTTTGTATCTATTTAGCTGAA
GTGGACACAGGTGAGAGGCTAAGGTAGACTTGTGGAGGAACGTTTCTCTG
AAACAGACATAGGAAAAAGGACGTTCTCCTAAAGCAAGCACATGAAAGGA
CACATGATGAATGTTATTTTTGCTAAGGAAGCATGTATCGGTCTGTCTTC
CATGCGTTGTTGGGCTTGACGTGTTGGGACTTCACAGAAATATCTTATGC
CCCAGTACAGGCCAATGCCAGGGCCAAGAAGTGTGAGTGGGTGGGTTGGG
AAGCAGGGCAGGGGAGGGTATAGGGGACTTTCAGGATAGCATTTGAAATA
TAAATGAAGAAAATATCTAATAAAATTTTTTAAATGTAAAAAATTTAAAA
AAATGTGATACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAAT
TAGTTCATGAAAAAAAAACCCACAACCAAAACCTTGTGGTGGTATGGTAT
AGTTTTTTGCCACTTCTTCGGACTCAACGTTAATTGGCAGAGTGAGGTCA
GCTGAGACAGCCTGACATACTGAGGCAAGACATATGTTGACACAATACCC
ATGGAGGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_n13.b1 MSMg01no509_n13.b1 CHROMAT_FILE:
MSMg01no509_n13.b1 PHD_FILE: MSMg01no509_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:13 2005
         (572 letters)



>mm_chr3_60881396_60882367
          Length = 972

 Score = 1062 bits (549), Expect = 0.0
 Identities = 567/573 (98%), Gaps = 2/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaggagaagactggctccctcatggttaggaagagggtctcaaaacatgccaaaacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaggagaagactggctccctcatggttaggaagagggtctcaaaacatgccaaaacgg 260

                                                                       
Query: 61  aaacatggcagcatccagacaggcatggtgcaggaggagctgagagttctacatgaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatggcagcatccagacaggcatggtgcaggaggagctgagagttctacatgaaggc 320

                                                                       
Query: 121 tactagcagaatactgacttcccaacagctaggatgaggatattaaagcccacattcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 321 tactagcagaatactgacttcccaacagctaggatgaggatattaaagcccacacccaca 380

                                                                       
Query: 181 gtgacacacctactccaacaaggctacacctcctagtagtgcttctccctgggccaagc- 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gtgacacacctactccaacaaggctacacctcctagtagtgcttctccctgggccaagca 440

                                                                       
Query: 240 tnattcactaaatcacacgtaataagctgtttctatttcaattaataaccatgtggtctt 299
           | || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 t-atacacaaaatcacacgtaataagctgtttctatttcaattaataaccatgtggtctt 499

                                                                       
Query: 300 ggtattatgttttgctttatgttttgccatacaacctgatatgataagccctttgagctc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtattatgttttgctttatgttttgccatacaacctgatatgataagccctttgagctc 559

                                                                       
Query: 360 agatccacagcttaccactcttttttttttaattaggtattttcctcatttacatttcca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agatccacagcttaccactcttttttttttaattaggtattttcctcatttacatttcca 619

                                                                       
Query: 420 atactatccaaaaagtccccaatacactccccaccccccagtccgctacccacccactcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atactatccaaaaagtccccaatacactccccaccccccagtccgctacccacccactcc 679

                                                                       
Query: 480 cactttttggccctggtgttcccctgtactggggcatataaagttgtcggcatctctttc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cactttttggccctggtgttcccctgtactggggcatataaagttgtcggcatctctttc 739

                                            
Query: 540 cagtgatggccgacaagaccatcttttgataca 572
           |||||||||||||||||||||||||||||||||
Sbjct: 740 cagtgatggccgacaagaccatcttttgataca 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)