CCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATACTTACTCCACAGGCAGCAGGAAGAGAGAGACACTGGAACT
GGCTTGGGTTTTGAAGGCCCAAAGTCCACCCCAGTGACACACTTCCTCCA
GCAAGTCCATGCCTACTTACCAAGGCCACACTTCCTAACCCCTCCCAGGT
AGTGCTCATCCTGATGGCTTTGCATTCAAATATATGAACCTGTTGTGGCC
GTTCTTATTCAAACCACCACAAAGATCTAGCAATAGTTAAATAGGATTCC
ATATCAAGTAAATATAGTATAAATATACACTTATTTTAATGGGAACATAT
TGAATGGTTCTAGTGACTCAAAAGAACAGGGTTTAAATGAATAATTTATG
AAATTTAGATCCCTAAAATTAAAATGTTCACATAACATATTAAATGATTG
GAAACATTTATGTTCTTCCAAAAAAATCAGCATTATATTATATTTGTTAT
GAATAATTTTTTTTAGATTTTAATTAGCATGCAAGGTAATATTTTTGTTA
CAGAACTTTCATGCGTAATTTGTGTTTTTGAGCCCCCTCTTCTATTCCAC
TTCCCACCCTGTTTTTCTGTCGTGCACTGTACCCCGCTAGTCTCCTGTCC
ATGCTCTGTTCTCCATTACTCCTTCTCACTTCCTGCAAACCTCTTCTTGC
CCGTCACCTTCTTCTGCTTCCCACAAAGGAGCACATAGTAAAAATGAAAT
TTACN

CATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACCTGAGGAATACCGAATGGCAGAGA
AGTACCTGAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTACATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTTTTTTTATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGTAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCATCAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACAATCATAAAGGAACTCACACAATATTTACTCACTGATAAGTGGA
TATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACCATTTGTTAAA
CACTTGAAACTCATGAAGAATGAAGACTGAAGTGTGAAC

Query= MSMg01no510_a18.b1 MSMg01no510_a18.b1 CHROMAT_FILE:
MSMg01no510_a18.b1 PHD_FILE: MSMg01no510_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
         (686 letters)



>mm_chr3_139313605_139314690
          Length = 1086

 Score = 1234 bits (638), Expect = 0.0
 Identities = 674/690 (97%), Gaps = 9/690 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcagcaggaagagagagacactggaactggcttgggttttgaaggcccaaagtccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcagcaggaagagagagacactggaactggcttgggttttgaaggcccaaagtccac 260

                                                                       
Query: 61  cccagtgacacacttcctccagcaagtccatgcctacttaccaaggccacacttcctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagtgacacacttcctccagcaagtccatgcctacttaccaaggccacacttcctaac 320

                                                                       
Query: 121 ccctcccaggtagtgctcatcctgatggctttgcattcaaatatatgaacctgttgtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcccaggtagtgctcatcctgatggctttgcattcaaatatatgaacctgttgtggc 380

                                                                       
Query: 181 cgttcttattcaaaccaccacaaagatctagcaatagttaaataggattccatatcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgttcttattcaaaccaccacaaagatctagcaatagttaaataggattccatatcaagt 440

                                                                       
Query: 241 aaatatagtataaatatacacttattttaatgggaacatattgaatggttctagtgactc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatatagtagaaatatacacttattttaatgggaacatattgaatggttctagtgactc 500

                                                                       
Query: 301 aaaagaacagggtttaaatgaataatttatgaaatttagatccctaaaattaaaatgttc 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagaacagggtttaagtgaataatttatgaaatttagatccctaaaattaaaatgttc 560

                                                                       
Query: 361 acataacatattaaatgattggaaacatttatgttcttccaaaaaaatcagcattatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acataacatattaaatgattggaaacatttatgttcttccaaaaaaatcagcattatatt 620

                                                                       
Query: 421 atattt-gttatgaataattttttttagattttaattagcatgcaaggtaatatttttgt 479
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 atatttagttatgaataattttttt-agattttaattagcatgcaaggtaatatttttgt 679

                                                                       
Query: 480 tacagaactttcatgcgtaatttgtgtttttgagccccctcttctattccacttcccacc 539
           ||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 tacagaactttcatgcacaatttgtttttttgagccccctcttctattccacttcccacc 739

                                                                       
Query: 540 ctgtttttctgtcgtgcactgtaccccgctagtctcctgtccatgctctgt-------tc 592
           ||||||||||||| |||||||||||||||||||||||||||||||||||||       ||
Sbjct: 740 ctgtttttctgtcttgcactgtaccccgctagtctcctgtccatgctctgtcttatgttc 799

                                                                       
Query: 593 tccattactccttctcacttcctgcaaacctcttcttgcccgtcaccttcttctgcttcc 652
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 800 tccattactccttctcacttcctgcaaacctcttcttgcccatcaccttcttctgcttcc 859

                                         
Query: 653 cacaaaggagcacatagtaaaaatgaaatt 682
           ||||||||||||||||||||||||||||||
Sbjct: 860 cacaaaggagcacatagtaaaaatgaaatt 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)