GCGACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATCGC
GCGGAATCAGNAAGATCGCCACATATTCAGTAACATTCAAATTCACTTCT
AGTAGAGACAGTGAAACTAATTAGGCATTACTATTTACTCACAGAGCTAG
AAAAGCTCACCGCTAGTCTGCATAGTAATTTCTTAGGACAATAGCCAAGT
CACACCCAAACACGGGAATACACAGTGGCCTAGGGAATAGGTGGGTTTGG
TGCAGGTTTCTTCACTAGGCCCAGAGGAATAGCATAATCAGGTATTTAAT
AGACTAGCATTGCATCAGAGTATTCTTCCTGGCTCCATTCTCAGGGGTAA
ACCAGCCTGGCTCCTGCCATCTTTTTATGTATGCATTCTTTTTGTTTTGT
GTCACTGTAACTTAGCGGATGTGTTCGCCTAACTTTTCTTGTTTTTCTTC
TGTATTAAAAGTCTGATGTTTGTTTGACAAAAATACATTCAGATCCACAT
TCCCTTGTGTTGTGCCTGTTTGTCACCACCTTCTTGCCAACTCCTTGCCG
ACCTGTAGCCGGAATCTGAGTTTCACCCTTGAATCAAGGACCCAAGTGAG
GTTCATCTGCAGCATACCAGGCCATGGTGGCACATGACAGAGCACACTGG
AGTTAAAAGAAAGAAAGCTCTAAGTTCAATATAAAGCTAGGCAGGTTACA
TAGATAAATCTTTTCTCAAAAAATACACCATG

NCCGCGATTCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCCATACATAAACATGATA
AAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAA
GGTGGAAGCAATCCCACTAAAATCAGGGATTAGACAAGGCTGCCCACTTT
CTCCCTACCTATTCAACATAGTACTTGTAGTCCTAGCCAGAGCAATTAGA
CAACAAAAGCAGATCAAGGGGATAAAATTGGAAAGGAAGAAGTCAAAACA
TCACTTTTTGCAGATGATATTATTTTATATATAAGTGACCCTAAAAATTC
CACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGAT
ATAAAATTAACTCAAACAAGTTAATGGCCTTTCTCTACACAAAGAATTAA
CAGGCTGAGAAAGAAATTATGGAAACAACACCCTTCTCAATATTCACAAA
TAATATAAAATACCTTGTTTGACTCTAACTAAGGAAGTGAAAGATCTGTA
TGATAAGAATTTCAAGTCTTTGAAGAAAGAAATTAAAGAAGATCTCAGAA
GATGGAAAAATCTCCCATACTCATGAATTGGCAGGATCAATATAGTAAAA
ATGGCTATCTTGCCGAAAGCAATCTACAGATTCATTGCAATCCCCATCAA
AATTCCAATTCGATTCTTCAACGAATTAGAAAGGGCAA

Query= MSMg01no510_d14.b1 MSMg01no510_d14.b1 CHROMAT_FILE:
MSMg01no510_d14.b1 PHD_FILE: MSMg01no510_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:45 2005
         (653 letters)



>mm_chr3_78000534_78001586
          Length = 1053

 Score = 1216 bits (629), Expect = 0.0
 Identities = 647/653 (99%), Gaps = 1/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaacattcaaattcacttctagtagagacagtgaaactaattaggcattactatttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtaacattcaaattcacttctagtagagacagtgaaactaattaggcattactatttact 261

                                                                       
Query: 61  cacagagctagaaaagctcaccgctagtctgcatagtaatttcttaggacaatagccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacagagctagaaaagctcaccgctagtctgcatagtaatttcttaggacaatagccaag 321

                                                                       
Query: 121 tcacacccaaacacgggaatacacagtggcctagggaataggtgggtttggtgcaggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcacacccaaacacgggaatacacagtggcctagggaataggtgggtttggtgcaggttt 381

                                                                       
Query: 181 cttcactaggcccagaggaatagcataatcaggtatttaatagactagcattgcatcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttcactaggcccagaggaatagcataatcaggtatttaatagactagcattgcatcaga 441

                                                                       
Query: 241 gtattcttcctggctccattctcaggggtaaaccagcctggctcctgccatctttttatg 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtattca-cctggctccattctcaggggtaaaccagcctggctcctgccatctttttatg 500

                                                                       
Query: 301 tatgcattctttttgttttgtgtcactgtaacttagcggatgtgttcgcctaacttttct 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tatgcattctttttgttttgtgtcactgtaacttagtggatgtgttcgcctaacttttct 560

                                                                       
Query: 361 tgtttttcttctgtattaaaagtctgatgtttgtttgacaaaaatacattcagatccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttttcttctgtattaaaagtctgatgtttgtttgacaaaaatacattcagatccaca 620

                                                                       
Query: 421 ttcccttgtgttgtgcctgtttgtcaccaccttcttgccaactccttgccgacctgtagc 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcccttgtgttgtgcctgtttgtcaccaccttcttgccaactccttgccgacctgtagc 680

                                                                       
Query: 481 cggaatctgagtttcacccttgaatcaaggacccaagtgaggttcatctgcagcatacca 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 cggaatctgagtttcacccttgaatcaaggacctaagtgaggttcatctgcagcatacca 740

                                                                       
Query: 541 ggccatggtggcacatgacagagcacactggagttaaaagaaagaaagctctaagttcaa 600
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 ggccatggtggcacatgacagagcacactggagttagaagaaagaaagctctaagttcaa 800

                                                                
Query: 601 tataaagctaggcaggttacatagataaatcttttctcaaaaaatacaccatg 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tataaagctaggcaggttacatagataaatcttttctcaaaaaatacaccatg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)