BAC Information

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BAC

Clone NameMSMg01-510I01
Chromosome3 (Build37)
Map Location 44,023,552 - 44,024,072
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677788, LOC100039264
Downstream geneLOC676484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510I01.T7 (MSMg01no510_i01.b1)MSMg01-510I01.TJ (MSMg01no510_i01.g1)
ACCAG583924AG583925
length735731
length of high quality
(start - end)
682 (54 - 735)527 (82 - 608)
definitionCHROMAT_FILE: MSMg01no510_i01.b1 PHD_FILE: MSMg01no510_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:06 2005CHROMAT_FILE: MSMg01no510_i01.g1 PHD_FILE: MSMg01no510_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGGACGATCTTCAAGACAGTCTATCAGAAGTAAAGGG
GGGAGAGAGAGTAGGAACAAAGAGGAAACATGGTGCACCAATTATGCATA
CAGGCCTTTCCAGGGGTCTTGAACTCGAGGAAAACTTAATATCAGGGAAG
AATACCTGGGGAGAGATTGGAAGGAAAGAGGAGAAAAAACAAAAGAAAAA
AGACTTTGTGGCCAGAATGACGGAGGCAGCAGGGAGGATATTTGGTGATC
CAGAAGCAGCTATGCCTTTAATTGAACAATTGGTTTATAAACAAGGTACG
CAGGAATGCAGATCAGCAATTACACCTAGAAAGAGTAAGGGGTTACAGGA
CTGGTTAAAGGTTTGCCATGAGCTTGGAGGGCTGCTTACTAATGCTGGAT
TGGCAGCAGCCATTCTGCAGGGGAGGAGGCGCTCGGATTCAACTGAGCTC
AAACTTTGCTTTAATTGTGGCAAACCAGGACATTTAAAAAAGGACTGCAG
AGCCCCTATAAAAAAGGACAGCACCAGGATTGTGTACTAAATGTAAAAAA
GGATATCATTGGGCTAAGGACTGTCATTCAATTAGAGATATATGAGGCAG
GCTCTTGCAGCCTACAAGGTCTTATTGTCCACCCTGGAGTTGTAGATCAG
GATTATAAAGGAGAACTTCAGGTTCTCTGTTCTTG
GGTGTGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATATCATTACCTTGTCAG
AGATTCAGAACATAGCTCAATAATCAAGTTGGGTTCCACAAAATTAAAAC
AGAAATAGGATTTCATTTGAGTGTTCCTTTATAACCAGGAAATATTTTTG
TTTTTATTATATGACACAAACCCAATGTATAAATCTTGAAGATGACATTT
GAAAAGAACACAGATAGTCTGATGAGAAACAAATGGTATCTAACATATTC
TTTAGATTGACTCAGGCAGTGACTGATGGTGTTGTCATAAACTCTAAGTA
CATATCATAAATCCTCAACAGAAACCATATTGTGCTCATTTGTCCTTTCC
ATATAAGCCAATATCCCTCCTCATAGACTTCATCATATGAAGAAAATTAT
AGAATTTATAAATACTATTTAAATCTCATTATTCTGTATTTGTTGTGAAA
AGCCAAACCAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAACCTATTTT
TGTTGTAGCTGTTGTTTTGTTGCCATTATAGTCCTGTTTTAAATCCCTAA
TTGCTGTAGTGATGAGACTCAGATTTCCTATTCATATTTTATTCTGGATT
AAAGAAAAAAGAGTCAGTAGAACATATTGTCTTAGTGTCAAGTTCACTCT
TCATGATGTAGAAACATCTCAAAACTATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_i01.g1 MSMg01no510_i01.g1 CHROMAT_FILE:
MSMg01no510_i01.g1 PHD_FILE: MSMg01no510_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:06 2005
         (527 letters)



>mm_chr3_44023445_44024371
          Length = 927

 Score =  969 bits (501), Expect = 0.0
 Identities = 518/529 (97%), Gaps = 10/529 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatcattaccttgtcagagattcagaacatagctcaataatcaagttgggttccacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatatcattaccttgtcagagattcagaacatagctcaataatcaagttgggttccacaa 569

                                                                       
Query: 61  aattaaaacagaaataggatttcatttgagtgttcctttataaccaggaaatatttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aattaaaacagaaataggatttcatttgagtgttcctttataaccaggaaatatttttgt 509

                                                                       
Query: 121 ttttattatatgacacaaacccaatgtataaatcttgaagatgacatttgaaaagaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttttattatatgacacaaacccaatgtataaatcttgaagatgacatttgaaaagaacac 449

                                                                       
Query: 181 agatagtctgatgagaaacaaatggtatctaacatattctttagattgactcaggcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agatagtctgatgagaaacaaatggtatctaacatattctttagattgactcaggcagtg 389

                                                                       
Query: 241 actgatggtgttgtcataaactctaagtacatatcataaatcctcaacagaaaccatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actgatggtgttgtcataaactctaagtacatatcataaatcctcaacagaaaccatatt 329

                                                                       
Query: 301 gtgctcatttgtcctttccatataagccaatatccctcctcatagacttcatcatatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgctcatttgtcctttccatataagccaatatccctcctcatagacttcatcatatgaa 269

                                                                       
Query: 361 gaaaattatagaatttataaatactatttaaatctcattattctgtatttgttgtgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 268 gaaaattatagaatttataaatactatttaaatctcattattctgtatttgttatgaaaa 209

                                                                       
Query: 421 gccaaaccaaaaaaaaaaaaaaacaaaaaaaaaaaaa--aaaacctatttttgttgtagc 478
           |||||||||||||||||||||||        ||||||  |||||||||||||||||||||
Sbjct: 208 gccaaaccaaaaaaaaaaaaaaa--------aaaaaaccaaaacctatttttgttgtagc 157

                                                            
Query: 479 tgttgttttgttgccattatagtcctgttttaaatccctaattgctgta 527
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgttgttttgttgccattatagtcctgttttaaatccctaattgctgta 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)