BAC Information

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BAC

Clone NameMSMg01-510M14
Chromosome3 (Build37)
Map Location 156,996,869 - 156,997,171
singlet/doubletsinglet
Overlap genenone
Upstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M14.T7 (MSMg01no510_m14.b1)MSMg01-510M14.TJ (MSMg01no510_m14.g1)
ACCAG584141AG584142
length744719
length of high quality
(start - end)
323 (328 - 650)68 (333 - 400)
definitionCHROMAT_FILE: MSMg01no510_m14.b1 PHD_FILE: MSMg01no510_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:27 2005CHROMAT_FILE: MSMg01no510_m14.g1 PHD_FILE: MSMg01no510_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCGAGAGAATCCGC
GGAATTCCAGGACTTCCCAGGATATACAGAGAAACCCGGTCTTGAAATAC
TCAAAAAAAAAAAAAAAAAAAAAAAAAAGATTGAGAGGAAAAGTGAGAAA
AAAATTGCCTCTGCTTTATAAGGACCCCATCCAAAGTATTAGTTACTATT
CCCATATTCTGTATGTTTAGTAGAGTCAGATAATAGTCAAAGTTGTGCTA
CAGAAGAAAAGAGTGTAGAGTTTGTTTCAATTATATACACCCACAAGCCA
GAAGTAGCCATTATTTTAATATTTTTGTGTTTAGGCAGGAAAAAAAAAAA
AAAAAACGAGAAGAAAGGAGAATAACCATGATTTTGTTGTTAGAAGTAGA
CAAAGAGACAATATGTTCTTAAACTTTGTTAACAAAATATGTGAATTGAA
GCATTCAAAAACTTCAATTTACTAAACTTTGACTTTCATACTGAAGTTAG
CTTTTTCTTTTATATAATTTATTTTAAAAGATATTTGCTTTCAGAAATTG
AGTATAATAGTGTAAGTGGTGTCATTTTGATGCCAGGTGCAAGTATTTTT
ACTCTTAGAACTGCATCTGACTAGAAAGAAGTAAGATTCGAGACCCAGTG
AGAGGCTCGATGTGGTGTGAACATTTGCAAATGTGTACCCTAAGTTAAAG
GATGGCATCAGGGAACCAGAGGAAGGCATGACATGAGGTCAGCN
CCATACAGTGGTGTCTGGGGCTGCTGTTTCAAAATGGGGGNGAACANAGA
ATTACGCAAAAGGCTCTGAAAACCATACACACATAACTCTATAGCGTTTA
TAATTTGATATAATATATACACATGCAAAATATATGTACCATGCATATTT
TTGAGCACTGGTATATATATTTTTTTCTTATATTTATTATAGGGGACTCA
CCTCTTCACTTGTATGATATTTAACATTTGTCTGGAAATCATCCCTTAGT
AATTTCAATAGACATCACATGACTATGAACAAATTACTTATTTTTTTATT
CTTGCTCATCTGGTACTCAGTGGCAGCCAAGACCCCCTGGTACCTCTGGG
AGCTGATATCTGCTCCTCCTTCCCAGGTTTTCTTGGAATATTGTCCCTGA
CAGCCTCTTAGAGAAAAAGACCCTGATGAGGGAAGCACAGACTGGGCATG
GATCAGAAATTATTAGGAAGCACACTCCCTTAAGAGCCCCATTTCATTGG
CCAGTGAGAAGAAAAAACCTTTTTCTTAGGTATCTGGAGCATGCTGACAG
GTGGGAGGAAATGCTATTGTTTTGTGAATCATTGCAATTAAGTATTATAC
CAATGTATTACTTTTGTGTGATCCACTATGTCGCAAACTGTGAGATTACT
TGAGTAACACAAAAGGAAGGCCCAGGGCATAGGTGGTGTGAGGCTGTGTG
CTGTTGAATCTCTTGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m14.b1 MSMg01no510_m14.b1 CHROMAT_FILE:
MSMg01no510_m14.b1 PHD_FILE: MSMg01no510_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:27 2005
         (323 letters)



>mm_chr3_156996467_156997189
          Length = 723

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 21  aaaaaaaaacgagaagaaaggagaataaccatgattttgttgttagaagtagacaaagag 80
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaaaaaaaacaagaagaaaggagaataaccatgattttgttgttagaagtagacaaagag 646

                                                                       
Query: 81  acaatatgttcttaaactttgttaacaaaatatgtgaattgaagcattcaaaaacttcaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 acaatatgttcttaaactttgttaacaaaatatgtgaattgaagcattcaaaaacttcaa 586

                                                                       
Query: 141 tttactaaactttgactttcatactgaagttagctttttcttttatataatttattttaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tttactaaactttgactttcatactgaagttagctttttcttttatataatttattttaa 526

                                                                       
Query: 201 aagatatttgctttcagaaattgagtataatagtgtaagtggtgtcattttgatgccagg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aagatatttgctttcagaaattgagtataatagtgtaagtggtgtcattttgatgccagg 466

                                                                       
Query: 261 tgcaagtatttttactcttagaactgcatctgactagaaagaagtaagattcgagaccca 320
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 465 tgcaagtatttttactcttagaactgcatctgactagaaagaagtaagattcaagaccca 406

              
Query: 321 gtg 323
           |||
Sbjct: 405 gtg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)