Query= MSMg01no510_m16.b1 MSMg01no510_m16.b1 CHROMAT_FILE:
MSMg01no510_m16.b1 PHD_FILE: MSMg01no510_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:28 2005
(652 letters)
>mm_chr3_62083975_62085027
Length = 1053
Score = 822 bits (425), Expect = 0.0
Identities = 464/477 (97%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 1 agccacacatattaattctctgtgtatttcctaccccaatcaagttgataaaattgacta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 477 agccacacatattaattctctgtgtatttcctaccccaatcaagttgataaaattgacca 418
Query: 61 tcacagcagctaccaagtactaaaagcc-aaaaaagaagtaatctattaatggattcata 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 417 tcacagcagctaccaagtactaaaagccaaaaaaagaagtaatctattaatggatttata 358
Query: 120 acatacaaaatagtttctttggttaagtttttcccaacttatagtctactttttgtatat 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 357 acatacaaaatagtttctttggttaagtttttcccaacttatagtctacttgttgtatat 298
Query: 180 gtgaatttcatttgcaccatagtagttgaagtgagattcaaattttatttttattttact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtgaatttcatttgcaccatagtagttgaagtgagattcaaattttatttttattttact 238
Query: 240 ttgtttttacagtcaacttcattaactcattaattaattcattcattccgttcacattct 299
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 237 ttgtttttacagtcaacttcattaactcattaattaattaattcattccattcacattct 178
Query: 300 tatctctgctccccctcctggtcctcccttctcctactcccttctcttctcatctgagag 359
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 177 gatctctgctccccctcttggtcctcccttctcctactcccttctcttttcatctgagag 118
Query: 360 ggggggggtccctcctgggtatccactgacctgggctcatcacgtctttgcagggctagg 419
|| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 117 ggtgggggtcccttctgggtatcccctgacctgggctcatcacgtctttgcagggctagg 58
Query: 420 tgcatcctctcccattaaggccagagaaggcagcccaattagggaaaatataccaca 476
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 tgcatcctctctcattaaggccagagaaggcagcccaattagggaaaatataccaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_m16.g1 MSMg01no510_m16.g1 CHROMAT_FILE:
MSMg01no510_m16.g1 PHD_FILE: MSMg01no510_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:28 2005
(421 letters)
>mm_chr3_61911222_61912043
Length = 822
Score = 754 bits (390), Expect = 0.0
Identities = 415/424 (97%), Gaps = 3/424 (0%)
Strand = Plus / Plus
Query: 1 atttattgcaagagactgacacagccaactgtagagattgcctaggtatggccaaaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttattgcaagagactgacacagccaactgtagagattgcctaggtatggccaaaacca 260
Query: 61 aaggacatgccctcataaagggcatattggaactaagaggatagtgtgatgctattgtcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 261 caggacatgccctcataaagggcatattggaactaagaggatagtgtgatgctatagttc 320
Query: 121 aaaagttggatttttt-ctggaaatcatggatttaggtatgtccgtcagtgttccactgg 179
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aaaagttggatttttttctggaaatcatggatttaggtatgtccttcagtgttccactgg 380
Query: 180 tggcatcagttagcacatgaaacttgtagagttattaagctcactctatgcattaaatca 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcatcagttagcacataaaacttgtagagttattaagctcactctatgcattaaatca 440
Query: 240 ggctcactcactctatgtagatatttcatgtttctcacatgagttattttgacttttatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctcactcactctatgtagatatttcatgtttctcacatgagttattttgacttttatc 500
Query: 300 acaactataaaatagcctcatatccaagactaatgagtgtttgttcaagtaatgataata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaactataaaatagcctcatatccaagactaatgagtgtttgttcaagtaatgataata 560
Query: 360 tagcctggttaggttggcacataaaactgcccatcacaaagcacatcatatat--gctgc 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tagcctggttaggttggcacgtaaaactgcccatcacaaagcacatcatatatatgctgc 620
Query: 418 ccat 421
||||
Sbjct: 621 ccat 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space: 334956
Effective search space used: 334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
