BAC Information

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BAC

Clone NameMSMg01-510M17
Chromosome3 (Build37)
Map Location 158,925,212 - 158,925,527
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510M17.T7 (MSMg01no510_m17.b1)MSMg01-510M17.TJ (MSMg01no510_m17.g1)
ACCAG584147AG584148
length745752
length of high quality
(start - end)
484 (89 - 572)316 (327 - 642)
definitionCHROMAT_FILE: MSMg01no510_m17.b1 PHD_FILE: MSMg01no510_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:28 2005CHROMAT_FILE: MSMg01no510_m17.g1 PHD_FILE: MSMg01no510_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATATTTGCGGCGTTAAACGACTCACANNATGCAAACCATGGGGGGGA
ATCCAAGAATCCGACAACCATGCAATGGAGGAGTGTACTTCTTTCTCCAC
AACCTTTCTAGCATCAGTGGTTACTTGAGATTTGATCTTAGCCATTCTGA
TTGGTGTAAGGTGGAATCTCAGGTTAGTTTTGGTTTGCATTTCCGTGATG
ACTAAAAATGTTGAAGATTTTTTTAAGTGCTAATCTGCCATTCTAGATTT
CTTAGTTGAAGTTTTTTGTTTGTTTGTTTGTTTGTTTAACTTTGTATCCC
ATTTTTAAATTGTTTTTTTTGGTTTTATAGAGTCTAACTTGAATTCTTTG
CATATTTTGGACACTAGACCTCTGTTGGATGCAGGGTTGCTAAAGATATT
TTCCCAATCTAAAGGTTGTCCTTATTGTCCTTTGTCTTACAGAGCTTTTT
AGTTGCTTTGTAGGCCCCATTTGTCAATATTGATCATAGAGACTGAACCA
TTGGTGTTATGTTCAGGAAAATTTCCCCTGTGCAGATGTATTCGAGGCTC
TTTCCCACTTTATGTTCTATTAGATTCAGTGCATCTGGTTTTCTGTGGAG
GTTCTTGATCCACTTGGACTTGAGTTTTATCCAGGAGATAAAAATGGATG
ACACTTCCTATTTCAATCCATTTGCCTATATAACCCAGGATGACCTAGTT
TTTAATAGCTGAGAATTATTCCTTTGTGAAATTGAACTAAAATTN
CAATGCTGTGGGAGGCCTGGAGAGCGCCCGGCTGCATTACTCTGGGNGAA
NNNANAGAAGGTTCCCAAAACCGGAGGCANANCACGNGACCAGAGCAAAT
GAACCTCCAATAATAATATCTACTATACAAATAAAGATTTTGAAATGAGA
AAAATGCAAATATTTCCAAGTTTTTATTGTTTATACTTTAGGAAACTTGG
AGGTAAAGGATGTGGTATGTAAGCTGAGGATCAAATAATTAAATAAGTAT
TTATACACTATCTAAGCTTAGTTTAGAACCAATTTTGTTTACATAGATCT
TATTGGCTCATTTTCTCTTAATCATATATAAAATTCTTATGCTCTCCATC
TACCTTTCAGAATTGCCATCTGTATACATAGTTAAGTTTCTACCTTACGG
TCTTTTTGATCCATATATTACCCATTTCCTTGCAATTTCTGCCACTTCTA
AACTGTTTTACACATTTTATAAAACTTAGCTATATACTAATTTTATATAT
TAAAAATGTTTTGGCTCTTCATAGCAAAGGCTTTGAGTTGCAAAACTCAC
AATTTCTTCTGTTCCATCATGTAATCATTATCATATTTATCTTAGTTTGA
CTTCTAATGCTATGATAATTCTTTTACCAAAATAGTTTTAGGGAGGAAAG
TTCATATTTCTCCATCAAGGGAAACCAAGGCAAGAAACTGAGGCAGCAGG
AACCTGGAGGGAGAAACTGAAGCAGAAGCCATGCTTTAACACTGATTACT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_m17.g1 MSMg01no510_m17.g1 CHROMAT_FILE:
MSMg01no510_m17.g1 PHD_FILE: MSMg01no510_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:28 2005
         (316 letters)



>mm_chr3_158925012_158925727
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataaaattcttatgctctccatctacctttcagaattgccatctgtatacatagttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaaattcttatgctctccatctacctttcagaattgccatctgtatacatagttaag 260

                                                                       
Query: 61  tttctaccttacggtctttttgatccatatattacccatttccttgcaatttctgccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctaccttacggtctttttgatccatatattacccatttccttgcaatttctgccact 320

                                                                       
Query: 121 tctaaactgttttacacattttataaaacttagctatatactaattttatatattaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaaactgttttacacattttataaaacttagctatatactaattttatatattaaaaa 380

                                                                       
Query: 181 tgttttggctcttcatagcaaaggctttgagttgcaaaactcacaatttcttctgttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttggctcttcatagcaaaggctttgagttgcaaaactcacaatttcttctgttcca 440

                                                                       
Query: 241 tcatgtaatcattatcatatttatcttagtttgacttctaatgctatgataattctttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 441 tcatgtaatcattatcatatttatcttagtttgacttctaatgctatgataaaactttta 500

                           
Query: 301 ccaaaatagttttagg 316
           ||||||||||||||||
Sbjct: 501 ccaaaatagttttagg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)