AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTATTATACAGATATTTCTGGGAGTTTAAGCACTATCTCTGATTCTG
AGTGATTTTTTTTTTAGATATATATTTTAGGACAGTACATAGTTGTATTA
AGCGGTTTTCTTAAAACCAATTTTGAGTTTATTTCTTTTAGTAAGTGATC
TTGCATATGTGTATAACTATAATCTATTCCTCATATTGTTATTCTCTTAA
AAGTTTTTGTTCACTTCCAATGCTTGACTCACACTCTAGGTTACTATATA
ATTTGAATTTTCATTATAGTCGTTGTGATTTTCTAAATTTTTTTTTTTTT
TTTTTTTGGTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGTCTTGGCTG
TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCAT
CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGTTTCCACCGCC
CGGCGATTTTCTAAATTTTGATGACACCTAATTTCCTATTTCCCAAATTA
ACCGTTTGTTTTTTTTTTTTTCGTTTTTTTGGGCTCCCCAAGAAACGGTT
TTTTTTCGTACACCCCGGTTTTTCTTGAAATCCTATTTAGTAAACCTTGC
CGCGTTCTCTTTTCCCTCTTTTTTTTTCCGCCCTTTTGTGCCCCTTAATG
CCTGATAGCCCTATAGCTTGTCGTCAGGCACCTGATCCTGGACC

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCAGAAGAGGGAGAGAAAGAATTGTA
GGAGCCAGAGGGCTCACAGTCATCACTAGAACAGAGTCAACTAACCTGGG
CCCATAAGGACTCAGAGAGACTGAATCGCTTGCTAGCCAGGGATCCTGCA
TGGGACTGACCTAGGCCCTCTGCACATATGCTACAGTTGTATAGCTTGGG
CTTCTTGTGGGATTCCTAACGGCAAGAGCAGGGGCTGTCTCTGACTCTGT
TGCCTGCCTGCCTTTGACTCTGTTGCCTGCCTTTGGGGGCCTTTCCTCTT
ACTGGGCTGCTTCTTCTAGCCTCAGTAGAAGGTGGGCTTAGTCTTACTGC
AATGCAATATGCCAAGTCTGGTTGATCTCCATGGGTGGCGTCCCCTTTTC
TGAAGAAAAATGAAGGAGGAATGGAGTCAAGAAGGATGACTGGGAGGAGA
GGAAGGAAGGAAAACCATGATTGGGCTATAAGTTTAATTAATTAATTTTA
AAATTAATTCTAAATTTAATTTAATTTAAAAGAAGGAGCAGAGGGGAACA
AGGAGGGAGGGAACAAAAAGAAAAAATCCCAGACAGCAGCATGAAAACTT
AATTTGCAACTCCCTTAGAGTAGTGGTTTCTTCACCTGTGGGTCAAAAAG
CCTTTTGGGAGGGAAACAACCCTTTCCCAGGGGTTGCCTATGACATCTGC
ATTTCTAT

Query= MSMg01no511_e18.b1 MSMg01no511_e18.b1 CHROMAT_FILE:
MSMg01no511_e18.b1 PHD_FILE: MSMg01no511_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:07 2005
         (379 letters)



>mm_chr3_52210271_52211051
          Length = 781

 Score =  565 bits (292), Expect = e-165
 Identities = 365/416 (87%), Gaps = 45/416 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttctgggagtttaagcactatctctgattctgagtga--ttttttttttagatata 58
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 475 atatttctgggagtttaagcactatctctgattctgagtgattttttttttttagatata 416

                                                                       
Query: 59  tattttaggacagtacatagttgtattaagcggttttcttaaaaccaattttgagtttat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tattttaggacagtacatagttgtattaagcggttttcttaaaaccaattttgagtttat 356

                                                                       
Query: 119 ttcttttagtaagtgatcttgcatatgtgtataactataatctattcctcatattgttat 178
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttcttttagtaagtgatcttacatatgtgtataactataatctattcctcatattgttat 296

                                                                       
Query: 179 tctcttaaaagtttttgttcacttccaatgcttgactcacactctaggttactatataat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tctcttaaaagtttttgttcacttccaatgcttgactcacactctaggttactatataat 236

                                                                       
Query: 239 ttgaattttcattatagtcgttgtgattttctaaatttt--------------------- 277
           |||||||||||||||||| ||||||||||||||||||||                     
Sbjct: 235 ttgaattttcattatagtagttgtgattttctaaattttgatgacacttaatttcctatt 176

                                                                       
Query: 278 ------------------ttttttttttttttttggttggtttttcgagacagggtttct 319
                             ||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 175 tcacaaattaactttttttttttttttttttttt--ttggtttttcgagacagggtttct 118

                                                                   
Query: 320 ctgtatagt-cttggctgtcctggaactcactttgtagaccaggctggcctcgaac 374
           |||| |||  || |||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 117 ctgtgtagcact-ggctgtcctggaactcactcagtagaccaggctggcctcgaac 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 781
Length adjustment: 9
Effective length of query: 370
Effective length of database: 772
Effective search space:   285640
Effective search space used:   285640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)