BAC Information

Click to search

BAC

Clone NameMSMg01-511F14
Chromosome3 (Build37)
Map Location 113,807,200 - 113,844,536
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511F14.T7 (MSMg01no511_f14.b1)MSMg01-511F14.TJ (MSMg01no511_f14.g1)
ACCAG584566AG584567
length750748
length of high quality
(start - end)		576 (46 - 621)559 (75 - 633)
definitionCHROMAT_FILE: MSMg01no511_f14.b1 PHD_FILE: MSMg01no511_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:12 2005CHROMAT_FILE: MSMg01no511_f14.g1 PHD_FILE: MSMg01no511_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,843,966 - 113,844,536)(113,807,200 - 113,807,724)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGCTACATCATGAATAAGTATAAGCTTTTCCTATTTATAATATCTATA
TTATAACTGAAAGCAAAGGATGAGGAACTGTGGGAGAGAGTAGTGGGAAA
GGGGAAGCAGATGGGATGTAAAAACAAATAAAGAAATAAATAAATAAGGA
AGAAAAAGTAATGGTGGAAAATCTCCACTAAACAAATGTTAAGAATTGAT
AATCTATCCTCTCAAAAATATGAAACCATTATTCTTCCAAATCTACATGA
GAACTGAAATTTTTGATAAAAATTCATTGTAGGGCTAAGATTTTTATTTA
GTTTATAATTATTTGTGACTCATACCTGATTAATGTGTGTTCAATATTAT
TCCCCCTCTGACTTCTCACATTTCCCATGCTCCACTTCAACCTCATGAGC
TTCTCTATGATTACTACTGCACAGACACACACTCACAAGCACACACATGC
ACATGACCTATTCACTTCTTAGAGCCCACTTAGTGTCACTTTTCTGTACA
CACGCAGGACTGGCCACTTGGGACCATACCAGGTAAAAAATGAGTTGAGG
AATGGGTAACATGATACTCATGACAAAGAAACAAATAAGACATCATTGTG
TATAGAAAGGTACAAAGTAAGAAGAACAAGGCATGGATAAAAAAGGTTAG
GTNCACNNAAACAACTATGTTTTTGAATGTCATAATAGATCTAATACTTT


CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATATCCTTCCAACCCCATGAATT
GATTTCGTGTGGCTTGATCTTGTGTAGGTTTTGAGCACCCTGTGATAGCA
TCTCTCAATTCATATGTACAACTGTCCAGTTGCATCCAGAGTATATGGTC
TCATCATAGTCATCTGTCTATCTGGGTCTTAGTATCTTTCTGCCTCTTCT
ACATTGATCCCTGAGTCAGAAGGCCTGTGCTATGGCTGACTCATTTGCAG
CTGAACATTCTGCAGTCCCTCATTCTCCACACATTGTCCAGTTGGGAGGC
TCTAATAATCACCTTCTACTGCTAAAAGAAGCTCATAAAATGAGGGATGA
GAGAGTCACTAATCTACAGTGTAATGATGTCTTTACAGTCAGTTTATATG
ATTTGTCATGTTAACTTGTTTAAAAGACAGAGAGAGAGATTTTAAATTTC
AGTTTTTCAGCTTAACCTCAAGAATTAAGAAGTATGTTGTCCAAACACTC
GTGGTGAGTTATTGGTGGAACTTCAGAGATCTTCCTGGTTTTGTTTCATG
CATTATTTTTTTATGATTTTGTATATTTTCCATCATAGGGTCATTTTTGT
AATGCACATTCATCATTCACTCATTAATATTTAAAACAGTAAACTAAATT
AACTTAACATCTATCAAGTATTTTTGCTCTGCTTGGCATTCTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_f14.b1 MSMg01no511_f14.b1 CHROMAT_FILE:
MSMg01no511_f14.b1 PHD_FILE: MSMg01no511_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:12 2005
         (576 letters)



>mm_chr3_113843614_113844589
          Length = 976

 Score = 1089 bits (563), Expect = 0.0
 Identities = 569/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatgctacatcatgaataagtataagcttttcctatttataatatctatattataactga 65
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 923 aatgctacatcatgaataagtataaacttttcctatttataatatctatattataactga 864

                                                                       
Query: 66  aagcaaaggatgaggaactgtgggagagagtagtgggaaaggggaagcagatgggatgta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aagcaaaggatgaggaactgtgggagagagtagtgggaaaggggaagcagatgggatgta 804

                                                                       
Query: 126 aaaacaaataaagaaataaataaataaggaagaaaaagtaatggtggaaaatctccacta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaaacaaataaagaaataaataaataaggaagaaaaagtaatggtggaaaatctccacta 744

                                                                       
Query: 186 aacaaatgttaagaattgataatctatcctctcaaaaatatgaaaccattattcttccaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aacaaatgttaagaattgataatctatcctctcaaaaatatgaaaccattattcttccaa 684

                                                                       
Query: 246 atctacatgagaactgaaatttttgataaaaattcattgtagggctaagatttttattta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atctacatgagaactgaaatttttgataaaaattcattgtagggctaagatttttattta 624

                                                                       
Query: 306 gtttataattatttgtgactcatacctgattaatgtgtgttcaatattattccccctctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtttataattatttgtgactcatacctgattaatgtgtgttcaatattattccccctctg 564

                                                                       
Query: 366 acttctcacatttcccatgctccacttcaacctcatgagcttctctatgattactactgc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acttctcacatttcccatgctccacttcaacctcatgagcttctctatgattactactgc 504

                                                                       
Query: 426 acagacacacactcacaagcacacacatgcacatgacctattcacttcttagagcccact 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acagacacacactcacaagcacacacatgcacatgacctattcacttcttagagcccact 444

                                                                       
Query: 486 tagtgtcacttttctgtacacacgcaggactggccacttgggaccataccaggtaaaaaa 545
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagtgtcacttttctgtaaacacgcaggactggccacttgggaccataccaggtaaaaaa 384

                                          
Query: 546 tgagttgaggaatgggtaacatgatactcat 576
           |||||||||||||||||||||||||||||||
Sbjct: 383 tgagttgaggaatgggtaacatgatactcat 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no511_f14.g1 MSMg01no511_f14.g1 CHROMAT_FILE:
MSMg01no511_f14.g1 PHD_FILE: MSMg01no511_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:12 2005
         (559 letters)



>mm_chr3_113807000_113807958
          Length = 959

 Score =  915 bits (473), Expect = 0.0
 Identities = 512/525 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatatccttccaaccccatgaattgatttcgtgtggcttgatcttgtgtaggttttga 60
           ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatatccttccaatcccacgaatcgatttcgtgtggcttgatcttgtgtaggttttga 260

                                                                       
Query: 61  gcaccctgtgatagcatctctcaattcatatgtacaactgtccagttgcatccagagtat 120
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacactgtgatagcatctctcagttcatatgtacaactgtccagttgcatccagagtat 320

                                                                       
Query: 121 atggtctcatcatagtcatctgtctatctgggtcttagtatctttctgcctcttctacat 180
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 attgtctcatcatagtcatctgtctatctgggtcttagtatctttctgcctcttctacgt 380

                                                                       
Query: 181 tgatccctgagtcagaaggcctgtgctatggctgactcatttgcagctgaacattctgca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatccctgattcagaaggcctgtgctatggctgactcatttgcagctgaacattctgca 440

                                                                       
Query: 241 gtccctcattctccacacattgtccagttgggaggctctaataatcaccttctactgcta 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gtccctcattctccacacattgtccagttgggaggctctgataatcaccttctactgcta 500

                                                                       
Query: 301 aaagaagctcataaaatgagggatgagagagtcactaatctacagtgtaatgatgtcttt 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagaagctcatacaatgagggatgagagagtcactaatctacagtgtaatgatgtcttt 560

                                                                       
Query: 361 acagtcagtttatatgatttgtcatgttaacttgtttaaaagacagagagagagatttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagtcagtttatatgatttgtcatgttaacttgtttaaaagacagagagagagatttta 620

                                                                       
Query: 421 aatttcagtttttcagcttaacctcaagaattaagaagtatgttgtccaaacactcgtgg 480
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 621 aatttcagtttttcagcttaatctcaagaattaagaagtatgttgtccaaacactcatgg 680

                                                        
Query: 481 tgagttattggtggaacttcagagatcttcctggttttgtttcat 525
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 tgagttattggtggaacttcagaggtcttcctggttttgtttcat 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |