BAC Information

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BAC

Clone NameMSMg01-511F16
Chromosome3 (Build37)
Map Location 109,506,269 - 109,533,314
singlet/doubletdoublet
Overlap genenone
Upstream geneGpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511F16.T7 (MSMg01no511_f16.b1)MSMg01-511F16.TJ (MSMg01no511_f16.g1)
ACCAG584570AG584571
length780747
length of high quality
(start - end)		156 (48 - 203)528 (76 - 603)
definitionCHROMAT_FILE: MSMg01no511_f16.b1 PHD_FILE: MSMg01no511_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:12 2005CHROMAT_FILE: MSMg01no511_f16.g1 PHD_FILE: MSMg01no511_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,533,169 - 109,533,314)(109,506,269 - 109,506,796)
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGGTTCTCTGATAGGGAGCTGAAGTGTCTACCCTCAAAGAAG
AAGCTATTGGCTCAATGTTAAGGAAAATAAGTCGAATCCCAGGATGTGCT
GAAGGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGT
GTGCGTCTTTTTGTGCCTTTGTGTGCGCGCCCCTTTTGCTTTTGTCCCCC
CGCTTCTCCTTTCCCCTCTTTTTTTCTTTTTCCCCCTTCTTCCTTTTTCT
CCCTTTCCCGCCCCCCTTTCTCCTTTCTTCTTTCCTTCCTTTTCTTTTTC
TCTTTCTTCTTCTTCCCTTTTTCCTTCCCCCTTCCCCCGTTTTCCTCTTT
TCACCCTTACCTTTTTTACTCCCCCTTCCCCCCTTCCCTTCTTCGCCCCC
CCTCTTTTTTTTCTTTCTTTCTCCCCCGCCTTTCCCTCCCTTTTTTTTCT
TCCTTCCTTTCCCTCCTCTTCTTTTTTTCCTTTTCCCCCCCCCCTCTCCC
CCCCCCTTTTCCCTTTTTCTTTCCTCTCCCCCCCTCCCCTTTCCTTTTCT
CCCCTTTTTCCTCTTTCTCCTTTCTTTTTTCCTCCCCTTTTTATCCCTTC
CCCCTTTTTCCCCCTTCTCCTTTTTTTTTTTTTTCTCCCCTCCCCCATTT
TATTCCTTTACCTCCTTCTCCCCTTTTTTTTCCTTCTCCTTTTTTCTCTT
TTTCTCCCTCGTCCCCTTCTTCTTTTCCCG

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCATCAAGGAATTTCTCTGGAAAC
ATATTCATGGATGTATACAAACACAGAGCCACGAAAGTGTTCATTGCAAG
GACACCTGTCAGCCTGAAAACTCAGGATGAACCTAAACATCCATCAGAGA
AGCACCTTTGGAGTAAACTTTGTCACAGCCACTGCCTTAAATACCTGTTG
GCTGATCACTAGCCACTATTTCCCACTTTCGCGTTCTTAAAAGAATCTGC
CTTTAGTTCTCTAAGACACTTTTAATTCATCTATTGCTGGCTGTCCAAAT
TAGTGGCAAAGTTTTAATGAAGTTCTAATAAAAATACATATCTAGTAAAT
ATTTGTTGTTGAATGAATAAATATATAAGGACATTGACATAAAAACTATA
TACCTGTTAAGAAATATGTTTGTTCAGATTATGTACAGACTTTTCTTCTT
ATTATTATTCTCTACATCAAAATGGACAACTACCCACATAGTATTTAAGG
TATGTAGAATGATGTTTATAGGATACATGCCAATATTACATCATTTTATG
TTAGATTCTTGATTTTGTAGATATTACCATCTGAATTACTAATCTCCTGT
GCCTAGCTGTGGAGAACTGAGTACATCCTCTGCTTTTAGACCACTTCTGA
TTGGTTTAGCCAATTTGAATAAGATGGTTTTAAATTTGTTTGTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_f16.b1 MSMg01no511_f16.b1 CHROMAT_FILE:
MSMg01no511_f16.b1 PHD_FILE: MSMg01no511_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:12 2005
         (156 letters)



>mm_chr3_109533008_109533563
          Length = 556

 Score =  275 bits (142), Expect = 1e-78
 Identities = 145/146 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggttctctgatagggagctgaagtgtctaccctcaaagaagaagctattggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcagggttctctgatagggagctgaagtgtctaccctcaaagaagaagctattggc 248

                                                                       
Query: 65  tcaatgttaaggaaaataagtcgaatcccaggatgtgctgaaggtgtgtgtgtgtgtgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcaatgttaaggaaaataagtcgaatcccaggatgtgctgaaggtgtgtgtgtgtgtgtg 188

                                     
Query: 125 tgtgtgtgtatgtgtgtgtgtgtgtg 150
           ||||||||| ||||||||||||||||
Sbjct: 187 tgtgtgtgtgtgtgtgtgtgtgtgtg 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no511_f16.g1 MSMg01no511_f16.g1 CHROMAT_FILE:
MSMg01no511_f16.g1 PHD_FILE: MSMg01no511_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:12 2005
         (528 letters)



>mm_chr3_109506069_109506996
          Length = 928

 Score =  951 bits (492), Expect = 0.0
 Identities = 519/528 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatcaaggaatttctctggaaacatattcatggatgtatacaaacacagagccacgaa 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agcatcaaggaatttccctggaaacatattcatggatgtatacaaacacagagccatgaa 260

                                                                       
Query: 61  agtgttcattgcaaggacacctgtcagcctgaaaactcaggatgaacctaaacatccatc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agtgttcattgcaaggacacctgtcagcctgaaaacgcaggatgaacctaaacatccatc 320

                                                                       
Query: 121 agagaagcacctttggagtaaactttgtcacagccactgccttaaatacctgttggctga 180
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 agagaagtagctttggagtaaactttgtcacagccactgccttaaatacctgttggccga 380

                                                                       
Query: 181 tcactagccactatttcccactttcgcgttcttaaaagaatctgcctttagttctctaag 240
           |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 381 tcactagccactattttccactttctcattcttaaaagaatctgcctttagttctctaag 440

                                                                       
Query: 241 acacttttaattcatctattgctggctgtccaaattagtggcaaagttttaatgaagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacttttaattcatctattgctggctgtccaaattagtggcaaagttttaatgaagttc 500

                                                                       
Query: 301 taataaaaatacatatctagtaaatatttgttgttgaatgaataaatatataaggacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataaaaatacatatctagtaaatatttgttgttgaatgaataaatatataaggacatt 560

                                                                       
Query: 361 gacataaaaactatatacctgttaagaaatatgtttgttcagattatgtacagacttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacataaaaactatatacctgttaagaaatatgtttgttcagattatgtacagacttttc 620

                                                                       
Query: 421 ttcttattattattctctacatcaaaatggacaactacccacatagtatttaaggtatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcttattattattctctacatcaaaatggacaactacccacatagtatttaaggtatgt 680

                                                           
Query: 481 agaatgatgtttataggatacatgccaatattacatcattttatgtta 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatgatgtttataggatacatgccaatattacatcattttatgtta 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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