Query= MSMg01no511_j14.b1 MSMg01no511_j14.b1 CHROMAT_FILE:
MSMg01no511_j14.b1 PHD_FILE: MSMg01no511_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:30 2005
(569 letters)
>mm_chr3_44306514_44307482
Length = 969
Score = 901 bits (466), Expect = 0.0
Identities = 502/514 (97%), Gaps = 3/514 (0%)
Strand = Plus / Minus
Query: 23 tcttggcacaatgcctggtttcctgagactaattccctaggatttgcctcatggagtaag 82
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 512 tcttggcacaatgtctggtttcctgagactaatttcctaggatttgcctcatggagtaag 453
Query: 83 taaatcatttcctatatgattctaaaacatccaagtatataccatggatcttatgacacg 142
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 452 taaatcatttcctatatgattctaaaacatccaagtatgtaccatggatcttatgacact 393
Query: 143 ctaaataaatgtaatacaatttacatatataattaatgcaattatattcaccaaacattg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctaaataaatgtaatacaatttacatatataattaatgcaattatattcaccaaacattg 333
Query: 203 aaatttcatattatataaataagtttaagggatataaaaatcataaataccttgagtaaa 262
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 332 aaatttcatattatataaataagtttaagggatataaaaatcaaaaataccttgagtaaa 273
Query: 263 ccacaatgtgtgatgacaatattaactgatttcagg-gttctagccttagcttttttttt 321
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 272 ccacaatgtgtgatgacaatattaactgatttc-ggtgttctagccttagcttttttttt 214
Query: 322 ttaattagatattttctacatttatatttccagtgatatctcaaaagtcccccatgccac 381
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 213 t-aattagatattttctacatttatatttccagtgatatcccaaaagtcccccatgacac 155
Query: 382 ccccccccacttccatacctacccactcccacttcttggccctggtgttcccctgtactg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ccccccccacttccatacctacccactcccacttcttggccctggtgttcccctgtactg 95
Query: 442 aggcatataaagtttgcaagaccaatgggcctctctttccagtgatggccgactaggcca 501
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 94 aggcatataaaggttgcaagaccaatgggcctctctttccactgatggccgactaggcca 35
Query: 502 tcttctgatacatatgcagctaaagacacgagct 535
||||||||||||||||||||||||||||||||||
Sbjct: 34 tcttctgatacatatgcagctaaagacacgagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_j14.g1 MSMg01no511_j14.g1 CHROMAT_FILE:
MSMg01no511_j14.g1 PHD_FILE: MSMg01no511_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:31 2005
(617 letters)
>mm_chr3_44166140_44167157
Length = 1018
Score = 1172 bits (606), Expect = 0.0
Identities = 616/620 (99%), Gaps = 3/620 (0%)
Strand = Plus / Plus
Query: 1 actaaactagaatcactgaaaagtgggcataattacaaaacaaatagatttatggaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 actaaactagaatcactgaaaagtgggcataattacaaaacaaatagatttatggaaaac 258
Query: 61 attgaagcaattttaaagtgttgtgaaaatggcaaagagtctaaaggaaaaagtaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attgaagcaattttaaagtgttgtgaaaatggcaaagagtctaaaggaaaaagtaaaata 318
Query: 121 agaaaaaaaaaaa--cccaaacttatacaaacaaaaatagaaaaggccaaaaagaaaatg 178
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agaaaaaaaaaaaaacccaaacttatacaaacaaaaatagaaaaggccaaaaagaaaatg 378
Query: 179 aaatctaatattaaaaataaaaagtttgcaacaaaactgctattttatttatagagttta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaatctaatattaaaaataaaaagtttgcaacaaaactgctattttatttatagagttta 438
Query: 239 gtattcagtaataagattggcttcatgaatttctatactcaactctcaatttaaaaacaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtattcagtaataagattggcttcatgaatttctatactcaactctcaatttaaaaacaa 498
Query: 299 ataattcattttaatacaaatagtattaattaaaaccactaaagttaatataattaaata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ataattcattttaatacaaatagtattaattaaaaccactaaagttaatataattaaata 558
Query: 359 taagaaagatatgagaatgttagaagatgaaaagactgttttaatgaactaggcctaaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taagaaagatatgagaatgttagaagatgaaaagactgttttaatgaactaggcctaaga 618
Query: 419 ggaccaatacacacacacacaaacacacacgtgcattgcatacataaatatacaaatatg 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 619 ggaccaatacacacacacacaaacacacacatgcattgcatacataaatatacaaatatg 678
Query: 479 aagttaattaggctattccaaaattcaaaaaaaa-ttcatttgaattaaaaacaatcata 537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 aagttaattaggctattccaaaattcaaaaaaaaattcatttgaattaaaaacaatcata 738
Query: 538 tgttttcattacttataattaatagtccattttataacataattgtaatggaacaaagtt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgttttcattacttataattaatagtccattttataacataattgtaatggaacaaagtt 798
Query: 598 taataagtatccatctaata 617
||||||||||||||||||||
Sbjct: 799 taataagtatccatctaata 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
