Query= MSMg01no511_m15.b1 MSMg01no511_m15.b1 CHROMAT_FILE:
MSMg01no511_m15.b1 PHD_FILE: MSMg01no511_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:45 2005
(500 letters)
>mm_chr3_65393207_65394106
Length = 900
Score = 944 bits (488), Expect = 0.0
Identities = 497/500 (99%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 1 ttggtgaggagcttgaggactcgacttacaagactaatttgaagtggcagagaatttcaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 202 ttggtgaggagcttgaggactcgacttacaagactaatttgaagtgacagagaattttaa 261
Query: 61 gtacaactagtttgttaaatatgtaaaaaaaaaaaaaaagtaggcaatatctaataccaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 gtacaactagtttgttaaatatgtaaaaaaaaaaaaaa-gtaggcaatatctaataccaa 320
Query: 121 gtgggtcatttcagcagagagataagaaactttaagaatcacgtagaagggctggagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggtcatttcagcagagagataagaaactttaagaatcacgtagaagggctggagaga 380
Query: 181 tggctcagaggttaagaggactgactgctcttccagaggacccaggttcaattcccagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctcagaggttaagaggactgactgctcttccagaggacccaggttcaattcccagca 440
Query: 241 cccacatggcagcacacaactctctgtaactccagatatccacatgtgtagacaaaacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccacatggcagcacacaactctctgtaactccagatatccacatgtgtagacaaaacac 500
Query: 301 caacgcacataaaacaaaaataaaataaaatattaatagctctcttcaaaattaaaacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacgcacataaaacaaaaataaaataaaatattaatagctctcttcaaaattaaaacat 560
Query: 361 attaactaaaatgaatctttgtatactctcacggtcgtggaaccaatcagtgaattgtag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaactaaaatgaatctttgtatactctcacggtcgtggaaccaatcagtgaattgtag 620
Query: 421 atcattagtgattcctgaggttgaaacaccaagagtgaaggaaaggcgtagcatttgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcattagtgattcctgaggttgaaacaccaagagtgaaggaaaggcgtagcatttgaat 680
Query: 481 gccacaagaaatcacaatga 500
||||||||||||||||||||
Sbjct: 681 gccacaagaaatcacaatga 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_m15.g1 MSMg01no511_m15.g1 CHROMAT_FILE:
MSMg01no511_m15.g1 PHD_FILE: MSMg01no511_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:45 2005
(521 letters)
>mm_chr3_65576578_65577498
Length = 921
Score = 955 bits (494), Expect = 0.0
Identities = 515/522 (98%), Gaps = 2/522 (0%)
Strand = Plus / Minus
Query: 1 tttcatttgaacatcaagagaaatcagccacatagctaaggtaaccttctctacttgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tttcatttgaacatcaagagaaatcagccacatagctaaggtaaccttctctacttgatc 662
Query: 61 ccagcctagaggtcaagaaacaactcct-aggttcgttcctgggggacagaaacacttta 119
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct: 661 ccagcctagaggtcaagaaacaactcctca-gttctttcctgggggacagaaacacttta 603
Query: 120 ctgagttaaaagagtaacaggtccatcaataatcatttcaggctacaacagagccacaag 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 602 ctgagttaaaagagtaacaggtccatcaataatcatttcgggctacaacagagccacaag 543
Query: 180 aagccacagcagatcatcacctacgactaaagcattgcccaaagatgacactcttgggtc 239
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 542 aagccacagcagatcatcacctacgactaaagcattgcccgaagatgacactctggggtc 483
Query: 240 tttccaaaggcttagttttgtgacacatcaatggcaagcccttcttacagccgtttagtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttccaaaggcttagttttgtgacacatcaatggcaagcccttcttacagccgtttagtg 423
Query: 300 ttgccccttacatgagcatctccttacagttgtccagctcctttgctgtcttctgaagtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgccccttacatgagcatctccttacagttgtccagctcctttgctgtcttctgaagtc 363
Query: 360 tcaacccaagtgcctctacttgacactgtaaatctgaaacgacacagcatggtcattagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcaacccaagtgcctctacttgacactgtaaatctgaaacgacacagcatggtcattagt 303
Query: 420 atactgtgtgtagcaggagtttttagctacactgctttggaaagaatgagtagttaccat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atactgtgtgtagcaggagtttttagctacactgctttggaaagaatgagtagttaccat 243
Query: 480 gactaggggagaaggagagaaagctgcaggagagaaagccaa 521
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 242 gactaggggagaaggagagaaagctgcaggaaagaaagccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
