ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGATGTTTGCCCTCATTTCATCTTTTGAGGTTCAAGCTGGTCTCAAT
CTTATAGTAATCCCCCCACCTATGCCTCCTAAGTGCTGGGATTATAGTAC
AATAATTTTTATTTTTAGTATTCATTAAAACTTTCTCCTGGCTTTATTAA
AGTATAATTGACAAATACAAATATATATTTGTGACATATGTCCTAATACA
CTGGTACGTGTATTCACTGGCAAATGATTATAGCAAGTTAATAAACATGG
CCATCATCTCACATCATCTCATGCTTTTGTGGTATTGATATGTATGATCT
AATCTCTTACTAATTTTCAGGTCTACAATATACTATTACTAACTGCAGCA
ACTATACTGTGCAAAGCACTTAACAAACTAGACCATCTTATTAACAGAAG
CTTTGTAGCACTTAGTCAACATTGCTTTAGTCTGTCATGATGTTTCTGGC
CTCATTCCTGGTAAGGATCATTTTACCCATTGTATACATTTGCTTTTCTA
AGATTTTTACCTATAAGTGGACCATTAACTTTTCTGTGCTCAGCCTCTTT
TAATGAGTAAAGTACCCTCTAGGTTCATTCCTGCCGTTGTAAGAAATAGA
ATTTCTTTCTTTGTTAATTATAAACCATCTTCCACTGTATATAAATTTAC
ATTAGTATTTATATATCTGTC

AATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATTACCTCAGCATAGACCTATTGG
ATATCAGTTGATGATGTACCCCGAGAACAGAAGTGGTCAAAGTGCCACAC
ACACACACACACACACACACACACACACACACACACACACATACACACGA
TTGGCAGAGAATGAGAAACATTCTCTATTGAGCCCTGGGAAAGCAGAAAG
GCCTGGAAGGTATCACAGAAGAAATATACTTGCCCTTATAATTCATATGT
ATGGAGAAACACATCTTGTTGTTAAAGGTACAAGATTCATACTTGAGAAT
ATTACAGAAAAATAACAACGGCTAAGAAGCTCACAATGTTTACTTTTGTC
CAGATGCTGTTTTCTATGTTTTACACACAAAGACTCATTGAACAAATTTG
GAGCACACACTTGTAATTCCAGTACTCAGGAGACTGAAACAGTGTATCAT
ATATTCAAAACCAACTTGTATTATATTGTAAGGCTTTGTATCAACAACAA
TATTAAAAAGTTATTGAAATTCTCCAAAACAAACCAGAATAAATATTACC
ATGAAATCATTACATATGGAAAAATTAAGCTCACGGGAGGCTGGGAAAAT
CCCTGAGTCATACAGCTATCAAAGAAAGTCAAGCATTCTGGCTAGGTGTA
AAGCCTTATAAGCAAATGCCAAACAGATCTTTTTAACTAGCTATAAAAAG
CAGAATTAATAAAAC

Query= MSMg01no511_m20.g1 MSMg01no511_m20.g1 CHROMAT_FILE:
MSMg01no511_m20.g1 PHD_FILE: MSMg01no511_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:46 2005
         (527 letters)



>mm_chr3_18590526_18591452
          Length = 927

 Score =  946 bits (489), Expect = 0.0
 Identities = 514/527 (97%), Gaps = 8/527 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattacctcagcatagacctattggatatcagttgatgatgtaccccgagaacagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 acattacctcagcatagacctattggatatcagttgatgatgtaccccgagaacagaagt 268

                                                                       
Query: 61  ggtcaaagtgccacacacacacacacacacacacacacacacacacacacacacacatac 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 269 ggtcaaagtgccatacacacacacacacacacacacacacacacacacacacacac---- 324

                                                                       
Query: 121 acacgattggcagagaatgagaaacattctctattgagccctgggaaagcagaaaggcct 180
               |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ----gattggaagagaatgagaaacattctctattgagccctgggaaagcagaaaggcct 380

                                                                       
Query: 181 ggaaggtatcacagaagaaatatacttgcccttataattcatatgtatggagaaacacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggtatcacagaagaaatatacttgcccttataattcatatgtatggagaaacacat 440

                                                                       
Query: 241 cttgttgttaaaggtacaagattcatacttgagaatattacagaaaaataacaacggcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgttgttaaaggtacaagattcatacttgagaatattacagaaaaataacaacggcta 500

                                                                       
Query: 301 agaagctcacaatgtttacttttgtccagatgctgttttctatgttttacacacaaagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagctcacaatgtttacttttgtccagatgctgttttctatgttttacacacaaagac 560

                                                                       
Query: 361 tcattgaacaaatttggagcacacacttgtaattccagtactcaggagactgaaacagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattgaacaaatttggagcacacacttgtaattccagtactcaggagactgaaacagtg 620

                                                                       
Query: 421 tatcatatattcaaaaccaacttgtattatattgtaaggctttgtatcaacaacaatatt 480
           ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tatcatatattcaaggccaacttgtattatattgtaaggctttgtatcaataacaatatt 680

                                                          
Query: 481 aaaaagttattgaaattctccaaaacaaaccagaataaatattacca 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaagttattgaaattctccaaaacaaaccagaataaatattacca 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)