Query= MSMg01no512_l04.b1 MSMg01no512_l04.b1 CHROMAT_FILE:
MSMg01no512_l04.b1 PHD_FILE: MSMg01no512_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:57 2005
(591 letters)
>mm_chr3_117335157_117336147
Length = 991
Score = 1120 bits (579), Expect = 0.0
Identities = 585/587 (99%)
Strand = Plus / Minus
Query: 5 gaattctatattgactgatggacttggccacatgaacaatgatgtctgtcagtgatggtg 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattctatagtgactgatggacttggccacatgaacaatgatgtctgtcagtgatggtg 732
Query: 65 taagaatcccaaggcacactctgggtactgctccaactgcagctggtgctctggaaagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 taagaatcccaaggcacactctgggtactgctccaactgcagctggtgctctggaaagaa 672
Query: 125 cattcaagggtctctagcatctccaaccttggtctcagcctgtgatgattccaggccatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cattcaagggtctctagcatctccaaccttggtctcagcctgtgatgattccaggccatg 612
Query: 185 gtagcttagattcttagcatatttcaggttttggaaatgtcacttatatactctttgaac 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtagcttagattcctagcatatttcaggttttggaaatgtcacttatatactctttgaac 552
Query: 245 tcggtctcatgagcactcgggatctcagtgttcaggaagctggacaaatccaaatcttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcggtctcatgagcactcgggatctcagtgttcaggaagctggacaaatccaaatcttca 492
Query: 305 ctgtctgaaatcctgtgaccatcttctctgtcacaccattttgaaactttgtcacaggtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgtctgaaatcctgtgaccatcttctctgtcacaccattttgaaactttgtcacaggtt 432
Query: 365 taactcagtgtagagagtgatgccaaggtgccttcaaggatgcagtacacatatgtgaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taactcagtgtagagagtgatgccaaggtgccttcaaggatgcagtacacatatgtgaaa 372
Query: 425 ttgggtcaaaagtaattgggtgaggtgctgcttctaggccaagtcgttttctacctacat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgggtcaaaagtaattgggtgaggtgctgcttctaggccaagtcgttttctacctacat 312
Query: 485 atcgttcataactggaaccatggagtttcattacaaatcctttcctctctattactctct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atcgttcataactggaaccatggagtttcattacaaatcctttcctctctattactctct 252
Query: 545 ctgctgcttaaatctcacattttccccatatacccacgtacctgagc 591
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctgctgcttaaatctcacattttccccatatacccacgtacctgagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_l04.g1 MSMg01no512_l04.g1 CHROMAT_FILE:
MSMg01no512_l04.g1 PHD_FILE: MSMg01no512_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:57 2005
(580 letters)
>mm_chr3_117195979_117196957
Length = 979
Score = 1083 bits (560), Expect = 0.0
Identities = 575/580 (99%), Gaps = 1/580 (0%)
Strand = Plus / Plus
Query: 1 taggttgataattccactcacaacctgtaatatataactttattctcttatagccagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggttgataattccactcacaacctgtaatatataactttattctcttatagccagcac 260
Query: 61 actattctttaattcagattatattctgagtctcaagaaaatttaaagaatttcttagaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 actattctttaattcagattatattctgagtctcatgaaaatttaaagaatttcttagaa 320
Query: 121 ctgatgacataaaattttacaaccatatacctctctatttagatatattttattcactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatgacataaaattttacaaccatatacctctctatttagatatattttattcactgt 380
Query: 181 ttggggctctgaaacagggcattcaattctggagaccatattctttactactgagggtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggggctctgaaacagggcattcaattctggagaccatattctttactactgagggtgt 440
Query: 241 atactaactattcaaattatttttaagatttttttctgttttctctatctggaatttaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactaactattcaaattatttttaagatttttttctgttttctctatctggaatttaag 500
Query: 301 gtttgatggttagagaccttccatatgacaacacatatgtcggagaaatgcgctctctca 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtttgatggttagagaccttccatatgacaacacatatgt-ggagaaatgcgctctctca 559
Query: 361 ctttctatttacaagcacagagaaaaatgtactcaacattatacatatattaatgtattt 420
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ctttttatttacaagcacacagaaaaatgtattcaacattatacatatattaatgtattt 619
Query: 421 atactttatttattatgattgacatattctggaagagcccctctgttgtgctaacttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atactttatttattatgattgacatattctggaagagcccctctgttgtgctaacttcct 679
Query: 481 gactgaatttttaaaaatagctatagctaggcatggtggtgaatgcttttaagtagatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gactgaatttttaaaaatagctatagctaggcatggtggtgaatgcttttaagtagatca 739
Query: 541 cttgggaagcaaggttaggatgatttatgtggttcaaggc 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttgggaagcaaggttaggatgatttatgtggttcaaggc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
