Query= MSMg01no513_c03.b1 MSMg01no513_c03.b1 CHROMAT_FILE:
MSMg01no513_c03.b1 PHD_FILE: MSMg01no513_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:31 2005
(438 letters)
>mm_chr3_79669830_79670664
Length = 835
Score = 700 bits (362), Expect = 0.0
Identities = 420/452 (92%), Gaps = 26/452 (5%)
Strand = Plus / Plus
Query: 7 attctctctctctcctcatcttccctcctcccctttgataggaccatgattgcaaactaa 66
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 190 attctctctctctcctcatcttccctcttcccctttgataggaccatgattgcaaactaa 249
Query: 67 acaaacataattttaaaaagaangttattttgcttactcatcttntaaaatatcactaag 126
|||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct: 250 acaaacataattttaaaaagaa-gttattttgcttactca-ctt-taaaatatcactaac 306
Query: 127 agaaagatactgcaagacaaaccactcaccaggaccctgactcccatcctt--------- 177
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 307 agaaagatactgcaagataaaccactcaccaggaccctgactcccatccttaccgcctca 366
Query: 178 -----------tctgcttcactggtctgcttactggccccattccagccccgatggtgac 226
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgctgccctttctgcttcactggtctgcttactggccccattccagccccgatggtgac 426
Query: 227 ctgggcttcgtctcatctttttagctcattgcttcttgccagtttcagggattcaggacc 286
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctgg-cttcgtctcatctttt-agctcattgcttcttgccagtttcagggattcaggacc 484
Query: 287 ccttctctggtgacttngagggggcttttctcattatggctgttatataggtatattata 346
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 485 ccttctctggtgactt-gagggggcttttctcattatggctgttatataggtatattcta 543
Query: 347 tatcatatacatatattcattctatatgctaaagaggtcaattgaaatattctgtatcat 406
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 544 tatcatatatatatattcattctatatgctaaagaggtcaactgaaatattctgtatcat 603
Query: 407 atgcatatattcatcctatatgctaaagaggt 438
||||||||||||||||||||||||||||||||
Sbjct: 604 atgcatatattcatcctatatgctaaagaggt 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 835
Length adjustment: 9
Effective length of query: 429
Effective length of database: 826
Effective search space: 354354
Effective search space used: 354354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_c03.g1 MSMg01no513_c03.g1 CHROMAT_FILE:
MSMg01no513_c03.g1 PHD_FILE: MSMg01no513_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:32 2005
(495 letters)
>mm_chr3_79783623_79784516
Length = 894
Score = 911 bits (471), Expect = 0.0
Identities = 489/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Minus
Query: 1 aagtgctgacaaggctcgaatatttgacttctgcacccatgacactaaaagtggctgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aagtgctgacaaggctcgaatatttgacttctgcacccatgacactaaaagtggctgcac 635
Query: 61 agatgggtatgagcaaagtcccaacagctctgagaatcccacaaaagctgtcttcttcag 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 634 agatgggtatgagcaaagtcccaacagctccgagaatcccacaaaagctgtcgtcttcag 575
Query: 121 tgaacacaattttctaccattcaaacatgaagttccgttttccatgcaagtctggttact 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgaacacaattttc-accattcaaacatgaagttccgttttccatgcaagtctggttact 516
Query: 181 agaaacaaaaggtaaatatttcctccccatgtgcagcaggaggaagctatatatggagaa 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 agaaacaaaaggtaaatatttcctccccatgtgctgcaggaggaagctatatatggagaa 456
Query: 241 aaataaaatatttccagtgtggaaagaacacaatagagatctgaccttcacacacataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaataaaatatttccagtgtggaaagaacacaatagagatctgaccttcacacacataaa 396
Query: 301 aacaatgtatgttgggagattcccagtggggaggggaaggtagaagttagtattgagctg 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 395 aacaatgtatgttgggagattcccagtgggaaggggaaggtagaagttagtattgagctg 336
Query: 361 tgctgaccaccacatattatattctcagatatcactcagctcttaccaggaaaagtaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgctgaccaccacatattatattctcagatatcactcagctcttaccaggaaaagtaaca 276
Query: 421 aagaaaattcagtatatagacatcttgctttactagagcatgctttcagtatatcactgc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 275 aagaaaattcagtatatagacatcttgctttactagagcatgccttcagtatatcactgc 216
Query: 481 ctttaggaagtctga 495
|||||||||||||||
Sbjct: 215 ctttaggaagtctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
