Query= MSMg01no513_c05.b1 MSMg01no513_c05.b1 CHROMAT_FILE:
MSMg01no513_c05.b1 PHD_FILE: MSMg01no513_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:32 2005
(658 letters)
>mm_chr3_151684859_151685917
Length = 1059
Score = 1100 bits (569), Expect = 0.0
Identities = 625/659 (94%), Gaps = 25/659 (3%)
Strand = Plus / Minus
Query: 1 tgatttcaaaggttttcatggtggtagctcatgatggggacagatatgggttatggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 964 tgatttcaaaggttttcatggtggtagctcatgatggggacagatatggattatggatta 905
Query: 61 tattgtgtaggacactacacacacacacacacacacacacacacacacacacacacacac 120
|||||||||||||||| ||||||||||||||||||||
Sbjct: 904 tattgtgtaggacact------------------------acacacacacacacacacac 869
Query: 121 acacacaccctatagatgcatgggtctactgtttccacaggttgtgtctcttgggtccaa 180
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 868 acacacactctatagatgcatgggtttactgtttccacaggttgtgtctcttgggtccaa 809
Query: 181 gtattcttggaaaaagagttactggggcagatatctggcattatttggttgaactttact 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 808 gtattcttggaaaaagagttactggggtggatatctggcattatttggttgaactttact 749
Query: 241 tttgattttaagttctttctagagtgctccataatgatgtggtggctcataccaccacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tttgattttaagttctttctagagtgctccataatgatgtggtggctcataccaccacct 689
Query: 301 ctcatgggccatatttgtgtacttaaactaattatggttgttaataatgattatcattta 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 688 ctcatgggccatatttgtgtacttaaactaattatggctgttaataatgattatcattta 629
Query: 361 ttgagtgtcgtttctaccaggcacgttaataaaatatgttttgaaagccatcacataggt 420
|||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 628 ttgactgtcatttctaccaggcacgttaataaaatatgttctgaaagccatcacataggt 569
Query: 421 tctaaaattaagtcatttaaaacttgactagctttctttaacatcaaaactgttagctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctaaaattaagtcatttaaaacttgactagctttctttaacatcaaaactgttagctgt 509
Query: 481 gaatgattttataaacactgtcaaagagtgcagaactgtatcaattc-tttttacaacat 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 508 gaatgattttataaacactgtcaaagagtgcagaactgtatcaattcttttttacaacat 449
Query: 540 tatgggtgataaaggcctttcctagtgaatggttgtctatttatgacagctaatctagtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tatgggtgataaaggcctttcctagtgaatggttgtctatttatgacagctaatctagtt 389
Query: 600 atgagggtttctgaagacgttgcttttgctcaggatttctactgcagcagcactaagct 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atgagggtttctgaagacgttgcttttgctcaggatttctactgcagcagcactaagct 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_c05.g1 MSMg01no513_c05.g1 CHROMAT_FILE:
MSMg01no513_c05.g1 PHD_FILE: MSMg01no513_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:32 2005
(602 letters)
>mm_chr3_151510217_151511211
Length = 995
Score = 1071 bits (554), Expect = 0.0
Identities = 587/602 (97%), Gaps = 7/602 (1%)
Strand = Plus / Plus
Query: 1 tatggataaacttggaggtggaatcctttgattaatacaaacgaggcctaaggttcaatc 60
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggacaaacttggaggcggaatcctttgattaatacaaacgaggcctaaggttcaatc 260
Query: 61 ccagtgctacaaaaacatggccaaatggatgagtagattaatagatagtttgcacatgta 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ccagtgctacaaaaacatggccaaatggatgagtggattaatagatagtttgcacatgta 320
Query: 121 tatgttctatatataatcatgaccttttcacatttttatctcattagcactctaaaatct 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatattctatatataatcatgaccttttcacatttttatctcattagcactctaaaatct 380
Query: 181 tttatcagttttaaatctgtttccacagaaaatttctaactacatgttgctccagacttt 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tttatcagttttaaatctgtttccacagaaaatttctaactacatattgctccagacttt 440
Query: 241 tgtaaactgaaaaaaaaaaaaacataatacatatgctttagacaagttctgttgtaattc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaactgaaaaaaaaa-------aatacatatgctttagacaagttctgttgtaattc 493
Query: 301 tgtttcatggcttttagaaattggctcaacaactgaattatttacatcacttgaaacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgtttcatggcttttagaaattggctcaacaactgaattatttacatcacttgaaacaga 553
Query: 361 caaacaagcagcaagacatttaaaacctattaatgttccatctgctcaaatccctgcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caaacaagcagcaagacatttaaaacctattaatgttccatctgctcaaatccctgcact 613
Query: 421 acctaagcagaatacatctctataaggttgcatttcacagtagcaaactatatttgagcc 480
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 614 acctaagcagaatccatctctataaggttgtatttcacagtagcaaactatatttgagcc 673
Query: 481 tcaatcctctagcttataatttgtggggttaatgaagtattccctttggcatttgtattg 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tcaatcctctagcttatgatttgtggggttaatgaagtattccctttggcatttgtattg 733
Query: 541 ctcaacatgggaaatctcaatatctgagatctggtatttaaaataatgaaatattttcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ctcaacatgggaaatctcaatatctgagatctggtatttaaaataatgaaatattttcac 793
Query: 601 ta 602
||
Sbjct: 794 ta 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 995
Length adjustment: 10
Effective length of query: 592
Effective length of database: 985
Effective search space: 583120
Effective search space used: 583120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
