Query= MSMg01no513_c08.b1 MSMg01no513_c08.b1 CHROMAT_FILE:
MSMg01no513_c08.b1 PHD_FILE: MSMg01no513_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:32 2005
(699 letters)
>mm_chr3_81896974_81898071
Length = 1098
Score = 1253 bits (648), Expect = 0.0
Identities = 685/698 (98%), Gaps = 4/698 (0%)
Strand = Plus / Plus
Query: 5 gaattcacactgttagctcacttgggagggagtataaactgtcacagttagcaatacaat 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactgg-agctcacttgggagggagtataaactgtcacagttagcaatacaat 263
Query: 65 ccaagcttcatggggaaaaagcacttaccaggcatgcacagtccctgtgttccactcaca 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaagcttcatggggaaaaagcccttaccaggcatgcacagtccctgtgttccactcaca 323
Query: 125 gaatcatacatacatgcgcaatgggaagggaagaaaggggacttgagaggagggcatggg 184
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 gaatcatacatacatgcacaatgggaagggaagaaagggaacttgagaggagggcatggg 383
Query: 185 agggaaaggatattagttcaaactccagcagaaaaaaaaaaaagtttagagttctccaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agggaaaggatattagttcaaactccagcagaaaaaaaaaaaagtttagagttctccaca 443
Query: 245 atgaaaccatggggggggg--agctttcttcattgatactagtggttcctgtagaaaata 302
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgaaaccatgggggggggggagctttcttcattgatactagtggttcctgtagaaaata 503
Query: 303 ttagaatattttaactggaataacacttcacaggcgtacactgaataata-caaaattag 361
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 ttagaatattttaactagaataacacttcacaggcgtacactgaataataacaaaattag 563
Query: 362 attcctaatacatacacatacactaaaatggtcagtaaaaatacttatgaagctatcaac 421
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 attcctaatacatacacatacactaaaatggtcagtaaaaatacttaagaagctatcaaa 623
Query: 422 aaagacaaaatggagcctcatcttctacttctgagttaaaacgtttccccttggatctta 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 aaagacaaaatggagcctcatcttctacttctgagttaaaacgtttccccttggatttta 683
Query: 482 tggctcaacatggcagtagaggatcatttaaacatgtatgtttgtgaatagtttaccact 541
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 684 tggctcaacatggcagtagaggatcatttatacatgtatgtttgtgaatagtttaccact 743
Query: 542 gtcctctacagcaggctctctggatgcaaatgttaactctatgactttattaaatttgaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtcctctacagcaggctctctggatgcaaatgttaactctatgactttattaaatttgaa 803
Query: 602 tattattgcattttaactagggttactataagtctttgtattctgatagttttgctattc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tattattgcattttaactagggttactataagtctttgtattctgatagttttgctattc 863
Query: 662 gtacattttacgtggattagtaggaagtacattgttgt 699
||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gtacattttacgtggattagtaggaagtacattgttgt 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1098
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1088
Effective search space: 749632
Effective search space used: 749632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_c08.g1 MSMg01no513_c08.g1 CHROMAT_FILE:
MSMg01no513_c08.g1 PHD_FILE: MSMg01no513_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:33 2005
(667 letters)
>mm_chr3_82038680_82039746
Length = 1067
Score = 785 bits (406), Expect = 0.0
Identities = 424/430 (98%), Gaps = 3/430 (0%)
Strand = Plus / Minus
Query: 240 gaagagttataaggaaaaaatttagaatgtatgtctagaaaagccctaggatgttggaag 299
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 549 gaagaggtataaggaaaaaatttagaatatatgtctagaaaagccctaggatgttggaag 490
Query: 300 atcagtgtactcctgtgctttcatgttcctgtgataaggaacatggcc-aaagcttacat 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 489 atcagtgtactcctgtgctttcatgttcctgtgataaggaacatggccaaaagcttacat 430
Query: 359 ttagtccatcatcaaaggaagcccaactggacttcaaggcagcaatccagatgcagaaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttagtccatcatcaaaggaagcccaactggacttcaaggcagcaatccagatgcagaaac 370
Query: 419 acaagcagggaccatggaagaaggatgctgattggcttgttactcagggtttgatcaact 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaagcagggaccatggaagaaggatgctgattggcttgttactcagggtttgatcaact 310
Query: 479 tgctcttttatacaacccaagtatgcctgcctatgagtggctctgcccactgtgagactg 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgctcttttatacaacccaagtatgcctgcctatgagtggctctgcccactgtgagact- 251
Query: 539 accttcccacatcaattattaatcaaggaaatgaaccagaggagcattcacctgctaatc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 accttcccacatcaattattaatcaaggaaatgaaccagaggagcattcacctgctaatc 191
Query: 599 tggtagaagcaatccctcagttgaggttccctctcctaaagtgactctagtttttc-aac 657
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 190 tggtagaagcaatccctcagttgaggttccctctcctaaggtgactctagtttttcaaac 131
Query: 658 tgacaagaac 667
||||||||||
Sbjct: 130 tgacaagaac 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
