XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGTATATTTTGAGTTTGCAATGAACAAAGGTCTGAAGCATTCTGATGGG
GCTTCTTTAAAACCCTATAATGATGTTGAAAATACAACTAATTCCTTCAG
GTGTCTTTGACAGGCAGACAACACATACAATCACCATATTATTAGCCCTC
AAAAGTACAGTACTTAGAACTTACTATTATATCACACATATTATATTTAA
GCTCTTCATTGTGGAGCAAATCTGTTTATAGAAAGTTAAAAATAATAACC
CAAAGTCAGCAATATGGTCATTAAAAAATGAGATCATGTTCTTGGAGGTC
ACTCTTGAAAACTTAACAGGTTCACAAGAGAAGATCCAACCCATTCTTGG
TTATTTCACTAGATTATCTGATCACAAGGAATTTGGCTTTTGTTGCAATA
AGGCAATAGACATAGAATTCTGTTTACTCAAATAAATGTGTCTCTAGCTT
CAGGTGATTGCTAATTACAGTACCTTTTATATTAATATGACCTACATTCT
TTCTATGCATTTTATGGACAAATTGTTCTTTTCAGTCAATGTCAATGTAT
GAGACCAAATTTATCTCATGATTACATAGTTTTGAATAAATTATGTGTTT
TTTCTTTCATAGGTATTTGCCTACAAGAAAGGTGTAACAAAGCCATATTA
CACCATCCACTCTAATACCCCATCATCCTACCATCACTGAA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAGGATAATGTAAATTCAGAGTTTATT
TTTTTCCTTTTTTTTAATTGGATATTTTCTTTAATTACTTTTCAAATATT
ATCTGCTTTCCCTGTTTCCCTCTTGAAAACCCCCTATCCCATTCCCTCTC
CCCCATTTCTATGAGGGTGTTCCCCAACCCACTCACCCACTCCCACCTCC
CTGCCCTCAAATACTACTCAGCTATTAAAAGCAATGAATTCATGAAATTC
TTAGGCAAATGGATGAAACTAGAAAATATCATCCTGAGTGAGGTAACCCA
ATCACAGAAAAAGACACATGGTATATATTCACTGATAAGCTCAAAGCTCA
GAACAACCAAGATACAATTCACAGACCACATGAAGCTCAAGAAGGAAGAA
CAAAGTGCAGTGTTTCAGTCCATCTTAGAAAAGGGAACAAAATACTCACA
GGAGAAAATATGGAAGCAAAGTGTAGAGCAGAGACTAATGGAAAGGCCAT
CCAGAGACTGCCCCACCTGGGGATCCATCCTATATACAGTCACCAAACAC
AGATACTATTGTAGATGCCAAGAAGTGAATACTGACAGGAGCCTGATATA
ACTGACTCCTGAGAGGCTCTACCAGAGCCTGACAAATAAAGAGGTGGATG
CTTGTAGCCAACCATCCAATGGGGTAGTTAGAGAAAGGACTAANAAAG

Query= MSMg01no513_n12.b1 MSMg01no513_n12.b1 CHROMAT_FILE:
MSMg01no513_n12.b1 PHD_FILE: MSMg01no513_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:29 2005
         (701 letters)



>mm_chr3_44396209_44397312
          Length = 1104

 Score = 1249 bits (646), Expect = 0.0
 Identities = 686/700 (98%), Gaps = 3/700 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtatattttgagtttgcaatgaacaaaggtctgaagcattctgatggggctt 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtacattttgagtttgcaatgaacaaaggtctgaagcattctgatggggctt 264

                                                                       
Query: 65  ctttaaaaccctataatgatgttgaaaatacaactaattccttcaggtgtctttgacagg 124
           |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ctttaaaaccctgtaatggtgttgaaaatacaactaatttcttcaggtgtctttgacagg 324

                                                                       
Query: 125 cagacaacacatacaatcaccatattattagccctcaaaagtacagtacttagaacttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagacaacacatacaatcaccatattattagccctcaaaagtacagtacttagaacttac 384

                                                                       
Query: 185 tattatatcacacatattatatttaagctcttcattgtggagcaaatctgtttatagaaa 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattatgtcacacatattatatttaagctcttcattgtggagcaaatctgtttatagaaa 444

                                                                       
Query: 245 gttaaaaataataacccaaagtcagcaatatggtcattaaaaaa-tgagatcatgttctt 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 gttaaaaataataacccaaagtcagcaatatggtcattaaaaaaatgagatcatgttctt 504

                                                                       
Query: 304 ggaggtcactcttgaaaacttaacaggttcacaagagaagatccaacccattcttggtta 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ggaggtcactcttgaaaacttaacaggttcacaagagaagatccatcccattcttggtta 564

                                                                       
Query: 364 tttcactagattatct--gatcacaaggaatttggcttttgttgcaataaggcaatagac 421
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcactagattatttttgatcacaaggaatttggcttttgttgcaataaggcaatagac 624

                                                                       
Query: 422 atagaattctgtttactcaaataaatgtgtctctagcttcaggtgattgctaattacagt 481
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 atagaattctgtttactcaaataaatgtgtctctggcttcaggtgattgctaattacagt 684

                                                                       
Query: 482 accttttatattaatatgacctacattctttctatgcattttatggacaaattgttcttt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 accttttatattaatatgacctacattctttctatgcattttatggacaaattattcttt 744

                                                                       
Query: 542 tcagtcaatgtcaatgtatgagaccaaatttatctcatgattacatagttttgaataaat 601
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcagtcaatgtcaacgtatgggaccaaatttatctcatgattacatagttttgaataaat 804

                                                                       
Query: 602 tatgtgttttttctttcataggtatttgcctacaagaaaggtgtaacaaagccatattac 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatgtgttttttctttcataggtatttgcctacaagaaaggtgtaacaaagccatattac 864

                                                   
Query: 662 accatccactctaataccccatcatcctaccatcactgaa 701
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 accatccactctaataccccatcatcctaccatcactgaa 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1104
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1094
Effective search space:   755954
Effective search space used:   755954
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)