ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAATGTCGAAGTAGGAACCGTCTGGCATGAGAAGGCTAGGATCCCAG
GACTGAAATATCATCCTGGTCCAGGACCAGCTAGAGCAAACAGTAACTGA
TCCGTTGAGGTTTGGTTTTTTGCTATGTAGTGTATTGTAATGTTAACTAC
TGGCCCTCAGAGCCTGGTTGATCCCAGGGAATCCACACTATACAATGTGA
CCTTGCTCTTTAATTTAAAACTTTTGGTTAAATAAAGATGCTAACAACTA
ATAGTTGGGCAGATGAGACATAGGTGGGGTTGTGGGGTTCCTGGGCTTGG
GTGGAGGGAGAATCACAAGGAGGGAGCAAAAAGATGGAGAGAGGAGGAAG
CTGCCACAGACTAGTGAATCTTAAAAAAACATAGCCATGAGAGCCAGCCA
ATTGGAGTTAAGAGCTACCCAGATGAAACATGAAAAGCTACAACTTTATA
ACTTGGGGTTGCTGATGGGAAAGTAAATTCTAATTTGCATAGAGGATAGA
TATCTGCCCAGCTCTAGTGCTGATTGGGGCTTCTTATAAATGTAAAGGTT
GTATGTCCTTTATCTGGGAACAGAATAATCAATAGTGGGGTAGAAGCCCC
TGATTGGATTAAATATTAATGACAGTGCTAATCACTAGGTCAGACTACCG
ATGATGAGTACTATCAAACAATTAGGAAGCTCACACAGC

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATGCTTTTCGTTCTATAGGAAAGTCCT
GAAGATTCTCTAGATAACTTTATGACAAGGTGGCAAAGATGGAATCTTTA
ATGATTAGGCAGACACGAGTCGGAGGATTGGTGTTTAAAGAGAGGATGTT
AGGGTGCTTTCAATGTGCTCCGAACTCTTCTCCTTTAAAAATTCTTAAGT
ACCTTATTTATTTTAGAATAAAATGTGTGGAAGGAAACAAGCTGTATATC
TCCCGTTTGTGATTTTGCTTTTAGCATCACCCATTGTTGTTGATTAAGCC
TTAATCATTCCGGATGACTTGGTGGGGGAAGTCACAGAGCTTCCAAAGCC
AATTTTAACTCCTCATGTTCTTTTATAGAACGTTCTGGCTCTCCTCACTC
TAGCTGGCTCTGAACTGTCCAGTGGACTATGGGAGAGGAAGTCAAGGAAT
CCTTCAGGCTCTGTGACTGCTCAGTGCCTGACGTAACTCCTGGCCATTAG
AAGGCAGTGAGTGGAGAAATGAATGACTCACAGTAATCACAGGGCCAAGG
GTTGAGACGCTGTGTGCCAGAGCAAATCCCATCATTTGTGGGAAAACTCA
GGTCTCAGGCCTAATAGAAAGAGGGTTTCACTTAATCCTTAGCTATAATG
GAAATCACATTCAACACAGATATGACACAATAGGGCCTC

Query= MSMg01no513_p07.g1 MSMg01no513_p07.g1 CHROMAT_FILE:
MSMg01no513_p07.g1 PHD_FILE: MSMg01no513_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:39 2005
         (582 letters)



>mm_chr3_55110988_55111969
          Length = 982

 Score = 1087 bits (562), Expect = 0.0
 Identities = 577/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgcttttcgttctataggaaagtcctgaagattctctagataactttatgacaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatgcttttcgttctataggaaagtcctgaagattctctagataactttatgacaagg 260

                                                                       
Query: 61  tggcaaagatggaatctttaatgattaggcagacacgagtcggaggattggtgtttaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaaagatggaatctttaatgattaggcagacacgagtcggaggattggtgtttaaag 320

                                                                       
Query: 121 agaggatgttagggtgctttcaatgtgctccgaactcttctcctttaaaaattcttaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggatgttagggtgctttcaatgtgctccgaactcttctcctttaaaaattcttaagt 380

                                                                       
Query: 181 accttatttattttagaataaaatgtgtggaaggaaacaagctgtatatctcccgtttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttatttattttagaataaaatgtgtggaaggaaacaagctgtatatctcccgtttgt 440

                                                                       
Query: 241 gattttgcttttagcatcacccattgttgttgattaagccttaatcattccggatgactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattttgcttttagcatcacccattgttgttgattaagccttaatcattccggatgactt 500

                                                                       
Query: 301 ggtgggggaagtcacagagcttccaaagccaattttaactcctcatgttcttttatagaa 360
           |||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||
Sbjct: 501 ggtgggggaagtcacagagcttccaaagccaactttaatttttcatgttcttttatagaa 560

                                                                       
Query: 361 cgttctggctctcctcactctagctggctctgaactgtccagtggactatgggagaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cgttctggctctcctcactctagctggctctgaactgtccagtggactacgggagaggaa 620

                                                                       
Query: 421 gtcaaggaatccttcaggctctgtgactgctcagtgcctgacgtaactcctggccattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaaggaatccttcaggctctgtgactgctcagtgcctgacgtaactcctggccattag 680

                                                                       
Query: 481 aaggcagtgagtggagaaatgaatgactcacagtaatcacagggccaagggttgagacgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggcagtgagtggagaaatgaatgactcacagtaatcacagggccaagggttgagacgc 740

                                                     
Query: 541 tgtgtgccagagcaaatcccatcatttgtgggaaaactcagg 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtgccagagcaaatcccatcatttgtgggaaaactcagg 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)