Query= MSMg01no514_a01.b1 MSMg01no514_a01.b1 CHROMAT_FILE:
MSMg01no514_a01.b1 PHD_FILE: MSMg01no514_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:43 2005
(608 letters)
>mm_chr3_140999518_141000524
Length = 1007
Score = 1079 bits (558), Expect = 0.0
Identities = 594/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaacagaatatggctagaagtgtctgaattctcaggtaacagtcccacatgacc 63
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattgaacagaa-atggctagaagtgtctgaattctcaggtaacagtcccacatgacc 262
Query: 64 tttctcttcctgacttttcatgaggggaagtcatcagtccacaagaacaatcatgaggga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttctcttcctgacttttcatgaggggaagtcatcagtccacaagaacaatcatgaggga 322
Query: 124 atatctcacaagcagtcagagctgatctcatggaaatgtcagctatttggctgtgagggt 183
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atctctcacaagtagtcagagctgatctcatggaaatgtcagctatttggctgtgagggt 382
Query: 184 cctgctttctgatatcccatcagaatggacttttacct-aaaaaaacaaaataatagcaa 242
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 cctgctttctgatatcccatcagaatggacttttacctaaaaaaaacaaaataatagcaa 442
Query: 243 tcactggtgaattcaagaatatgaaacctttgttgatgctgagggagtgaaaattactgc 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 443 tcactggtgaattcaagaatatgaaacctttgttgatgctgagggagtgaaaattattgc 502
Query: 303 tttcactatggaaaacagcatggaaattgaaatgcaaaggtaaacctaacatatgattca 362
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 cttcactatggaaaacagcatggaaattgaaatgcaaaggtaaacctaaaatatgattca 562
Query: 363 ataattacactgctttgtacacatctaaagcaaaggtaatcaacgcctcaaggaaatgtc 422
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 563 ataattacactgctttgtacacatctaaagcaaaggtaatcaatgcctcaaggaaatgtc 622
Query: 423 tgaatttccactttcattgccaaggcaagaaagcaacgagtgtccatcagaggatgaata 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 tgaatttccactttcattgccaagacaagaaagcaacgagtgtccatcagaggatgaata 682
Query: 483 gaaaaagaaagtgtgatacacatgcagaaaatatcagtcagtcttaataaggaaggaaat 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 683 gaaaaagaaagtgtgatacacatgcagaaaatatcagtcagtcttagtaaggaaggaaat 742
Query: 543 cccacaataatgaaaacacagatgaacctatggacactgtgctaaaggaaataagccaca 602
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cccacaatgatgaaaacacagatgaacctatggacactgtgctaaaggaaataagccaca 802
Query: 603 cccaag 608
||||||
Sbjct: 803 cccaag 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_a01.g1 MSMg01no514_a01.g1 CHROMAT_FILE:
MSMg01no514_a01.g1 PHD_FILE: MSMg01no514_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:43 2005
(625 letters)
>mm_chr3_141175442_141176467
Length = 1026
Score = 1195 bits (618), Expect = 0.0
Identities = 624/626 (99%), Gaps = 1/626 (0%)
Strand = Plus / Minus
Query: 1 catcaactgagggatgctgtaccttggtagtatgtttgtccttcctgctcattagagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 catcaactgagggatgctgtaccttggtagtatgtttgtccttcctgctcattagagctt 767
Query: 61 taatggaaaaaaatggacattcatgcttgacctaccagtgaagaagaaactattataatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 taatggaaaaaaatggacattcatgcttgacctaccagtgaagaagaaactattataatt 707
Query: 121 ttccataactgggtttattattgaatttatctgagatagccctgatcatcttgt-aaaaa 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 706 ttccataactgggtttattattgaatttatctgagatagccctgatcatcttgtaaaaaa 647
Query: 180 aaaatcttgtgaaatcttatttagaactgtaacaaaaaatattttcaaataaagattttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aaaatcttgtgaaatcttatttagaactgtaacaaaaaatattttcaaataaagattttt 587
Query: 240 gacagacataatagttttggaggttagattcccactaagtcagaacaattacacattgat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gacagacataatagttttggaggttagattcccactaagtcagaacaattacacattgat 527
Query: 300 gaacaacaatgaacagagttttttgtaacaaaagcaacatttcacagtttcactgtattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaacaacaatgaacagagttttttgtaacaaaagcaacatttcacagtttcactgtattt 467
Query: 360 aacacttgataaaatcacttccacaattttgttttagaacaggttgaaatttcagcttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aacacttgataaaatcacttccacaattttgttttagaacaggttgaaatttcagcttat 407
Query: 420 gtaattttgaatattgtcatggtaataaccatttccagaatcgttaacatttctgtccca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtaattttgaatattgtcatggtaataaccatttccagaatcgttaacatttctgtccca 347
Query: 480 caaacatttccccatgtagcatattcaagagtttctaaatgatgccttgaattcctacta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caaacatttccccatgtagcatattcaagagtttctaaatgatgccttgaattcctacta 287
Query: 540 ccctgtgatattccacctgtctttattagcagattattcctttatttctagtcactaaat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcctgtgatattccacctgtctttattagcagattattcctttatttctagtcactaaat 227
Query: 600 atattctttatcttaacttcttattt 625
||||||||||||||||||||||||||
Sbjct: 226 atattctttatcttaacttcttattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
