BAC Information

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BAC

Clone NameMSMg01-514C16
Chromosome3 (Build37)
Map Location 24,708,566 - 24,709,043
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514C16.T7 (MSMg01no514_c16.b1)MSMg01-514C16.TJ (MSMg01no514_c16.g1)
ACCAG586716AG586717
length758751
length of high quality
(start - end)		629 (40 - 668)650 (68 - 717)
definitionCHROMAT_FILE: MSMg01no514_c16.b1 PHD_FILE: MSMg01no514_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:57 2005CHROMAT_FILE: MSMg01no514_c16.g1 PHD_FILE: MSMg01no514_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTTGTGATTGGGTTACCTCATTCAGGATAATGCCCTCCAGGTCCATCCAT
TTTCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTC
CATTGTGTAAACGTACCACATTTTCTGTATCCATTCTCCCATGCTCATGG
ATTGGCAGGATCAAGATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTA
CAGATTTAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAAT
TAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATA
GCAAAAACTCTTCTCAAGGATAAAAGAACGTCTGGTGGAATCACCATGCC
TGACCTAAAGCTGTACTACATAGCAATTGTGATAAAAACTGCATGGTACT
GGTATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAA
ATGAACCCACACACCTATGGTCACTTGATCTTCAACAAGGGAGCTAAAAA
CATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTACTGGCACAACT
GGCAGTTAGCATGTAGAAGAATGCAAATTGATCCATTTCTATCTCTTTGT
ACTAAGGTCAAATCTAAGTGGTTCAAGGAACTCCACATAGAACCAGAGAC
AGTGAAATTTAATAAAGATTCTTAATCGCTTCAGCCTCCCCTATAGCTCA
CCCACCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGAATAAGTCGCATTTTATTAATATCAGTAT
GCATACTTTAAGTTCTTTTGCTCTAAAGAACCCTAAGTAATGCTCTAATT
AAAAAGATGTGGGAAGAAATAAACAAGTCCCTTTCCTGAATTTGAAAAAG
AGGCCAATATGGATAAAGTTACAATTAAATTAAATTTAAAGAATGAGGAT
TGAGACAACATAAGAGTTCTAATTTGTTTTCTATTTATCTAAGTTTTGTT
CACAATGAAATTGCCTTATAAGTTAATAGATATTATTAATCATCGATCTT
ATTTCAGTAATGAATTGCATGTGTCTACTAAACTAAATAACTTCCAATGT
CCTCTATCTACTGGGAGGATAGCACTGTCACTACAAAGCACAGAGATACT
GGGTGCAAGCTATTCCTGTTTCAGGCTCAAGTTTTGGCAGCATGCCTGTT
TACTAAATTTTTGCTTAATGAGTTCACCCAAATGTACTGATGTATTTGGT
TAGTGTTAGGATATTACAAATAACTGGGCCCACCCTGCCATTTTAACAGT
AAATTTTTTATCATTAATGTGATTCAGATTTTGTTAACTTTACAAATATC
CACAAGTATATCTGTATGTCTAGAATGAGGTCAATGAATTAACCAATACT
ATCCTTTCATACCTTGTAGAGATTTTATTTACTGCATGTTTTGAAAGCTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_c16.g1 MSMg01no514_c16.g1 CHROMAT_FILE:
MSMg01no514_c16.g1 PHD_FILE: MSMg01no514_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:57 2005
         (650 letters)



>mm_chr3_24708366_24709417
          Length = 1052

 Score =  849 bits (439), Expect = 0.0
 Identities = 468/479 (97%), Gaps = 4/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaataagtcgcattttattaatatcagtatgcatactttaagttcttttgctctaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tctgaataagtcgcattttattaatatcagtatgcatactttcagttcttttgctctaaa 260

                                                                       
Query: 61  gaaccctaagtaatgctctaattaaaaagatgtgggaagaaataaacaagtccctttcct 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaccctaagtaatgctctagttaaaaagatgtgggaagaaataaacaagtccctttcct 320

                                                                       
Query: 121 gaatttgaaaaagaggccaatatggataaagttacaattaaattaaatttaaagaatgag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtttgaaaaagaggccaatatggataaagttacaattaaattaaatttaaagaatgag 380

                                                                       
Query: 181 gattgagacaacataagagttctaatttgttttctatttatctaagttttgttcacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgagacaacataagagttctaatttgttttctatttatctaagttttgttcacaatg 440

                                                                       
Query: 241 aaattgccttataagttaatagatattattaatcatcgatcttatttcagtaatgaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattgccttataagttaatagatattattaatcatcgatcttatttcagtaatgaattg 500

                                                                       
Query: 301 catgtgtctactaaactaaataacttccaatgtcctc---tatctactgggaggatagca 357
           |||||||||| ||||||||||||||||||||||||||   ||||||||||||||| ||||
Sbjct: 501 catgtgtctagtaaactaaataacttccaatgtcctcctttatctactgggaggacagca 560

                                                                       
Query: 358 ctgtcactacaaagcacagagatactgggtgcaagctattcctgtttcaggctcaagttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ctgtcactacaaagcacagagatactgggtgcaagctattcctgtttcaggctcaagctt 620

                                                                      
Query: 418 tggcagcatgcctgtttactaaatttttgcttaatgagttcacccaaatgtactgatgt 476
           |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tggcagcatgcctggttactaaatttt-gcttaatgagttcacccaaatgtactgatgt 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space:   666880
Effective search space used:   666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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