TCTATATTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTCGAG
CCTTGTGGCCAATATCCATTATCTCCTGTGTGAGATGCATGTCGGTCCGG
AGCTCTGTCATTAAACTACCTCATGTAATTACATCAGGGTGGTCTATTCA
TGATTCTTTGGGTGCACACTGGATTGGGAATTGAGTGGGGGTTTCCCCCC
TAGGTTCTATCAAACTCACCTCTGTGTCTTAACATTTAATAACATAAAAT
ATATGAAGACAGTTTTTATTTCTATTATTTAAAAATGAACTCTTATTTTG
CTAAACTTATTTCTGACCTCAGTACTATTAAACCCTAAATTGTTAATTTT
TTTGTGATGAATGAATTTTGCTTTTGTTCCATAAGATTCTAATACTGTTA
TATTTTAAAGCCCATAAATATTTGTAAGACTATTTGGAGAATCATTTCAG
ATTCTATGTCATTGCTGTTCCTTCAGATGCATTTTTAGGCAAAGCTTATT
ATACATGTAGATAGGAGGAAAATAACCCCTTTTTTTCTTTTTTTGTTTGG
AAACCTTTATTTAATGTCATTGTGAATGGGTAAATTTTTCTAACTTAAGC
AGTTACAAGAATATCAGTATTTTCTTAGAAACTATTTTACTTTCAACCCT
TTTATTTGCATAAACGTTCTAGACTCATACTGAATGAGAGAAACAAAACT
GGACTTTTTTGTCTGTCTTTGACTACTAG

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACTCTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTAT
GCCCCTCCTTAGATTTGGGAACAAAACCCCATGG

Query= MSMg01no515_d10.b1 MSMg01no515_d10.b1 CHROMAT_FILE:
MSMg01no515_d10.b1 PHD_FILE: MSMg01no515_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:26 2005
         (708 letters)



>mm_chr3_77107796_77108903
          Length = 1108

 Score = 1162 bits (601), Expect = 0.0
 Identities = 679/705 (96%), Gaps = 2/705 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacacccctaagccccttaccccataaaaacccctagctttcgagccttgtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 205 gaattccacacccctaagccccttaccccataaaaacccctagcttttgagcctcgcggc 264

                                                                       
Query: 65  caatatccattatctcctgtgtgagatgcatgtcggtccggagctctgtcattaaactac 124
           | | |||  ||||||| ||||||||| |||||| ||||| |||||| ||||||| ||| |
Sbjct: 265 cgacatctgttatctcatgtgtgagacgcatgttggtccagagctccgtcattacactgc 324

                                                                       
Query: 125 ctcatgtaattacatcagggtggtctattcatgattctttgggtgcacactggattggga 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatgtgattacatcagggtggtctattcatgattctttgggtgcacactggattggga 384

                                                                       
Query: 185 attgagtgggggtttcccccctaggttctatcaaactcacctctgtgtcttaacatttaa 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgagtgggggtttcccctctaggttctatcaaactcacctctgtgtcttaacatttaa 444

                                                                       
Query: 245 taacataaaatatatgaagacagtttttatttctattatttaaaaatgaactcttatttt 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacataaaatatctgaagacagtttttatttctattatttaaaaatgaactcttatttt 504

                                                                       
Query: 305 gctaaacttatttctgacctcagtactattaaaccctaaattgttaatttttttgtgatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gctaaacttatttctgacctcagtactattaaaccctaaattgttaaattttttgtgatg 564

                                                                       
Query: 365 aatgaattttgcttttgttccataagattctaatactgttatattttaaagcccataaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgaattttgcttttgttccataagattctaatactgttatattttaaagcccataaat 624

                                                                       
Query: 425 atttgtaagactatttggagaatcatttcagattctatgtcattgctgttccttcagatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 atttgtaagactatttggagaatcatttcagattctatgtcattgctgttccttcagata 684

                                                                       
Query: 485 catttttaggcaaagcttattatacatgtagataggaggaaaataacccctttttttctt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 catttttaggcaaagcttattatacatgtagataggaggaaaataacccctttttt-ctt 743

                                                                       
Query: 545 tttttgtttggaaacctttatttaatgtcattgtgaatgggtaaatttttctaacttaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 744 tttttgtttggaaacctttatttaatgtcattgtgaatgggtaaatttttctaacttcag 803

                                                                       
Query: 605 cagttacaagaatatcagtattttcttagaaactattttactttcaacccttttatttgc 664
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cagttacatgaatatcagtattttcttagaaactattttactttcaacccttttatttgc 863

                                                        
Query: 665 ataaacgttctagactcatactgaatgagagaaa-caaaactgga 708
           ||| || ||||||||||||||||||||||||||| |||| |||||
Sbjct: 864 atagacattctagactcatactgaatgagagaaaacaaacctgga 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)