BAC Information

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BAC

Clone NameMSMg01-515E08
Chromosome3 (Build37)
Map Location 33,722,551 - 33,723,021
singlet/doubletsinglet
Overlap geneCcdc39
Upstream geneUsp13, Pex2, EG545512, LOC100041058, Ttc14
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515E08.T7 (MSMg01no515_e08.b1)MSMg01-515E08.TJ (MSMg01no515_e08.g1)
ACCAG587550AG587551
length785785
length of high quality
(start - end)
706 (44 - 749)604 (75 - 678)
definitionCHROMAT_FILE: MSMg01no515_e08.b1 PHD_FILE: MSMg01no515_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:31 2005CHROMAT_FILE: MSMg01no515_e08.g1 PHD_FILE: MSMg01no515_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGTGATACCGAATGGCAGAGAAACACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGAGA
GTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATGTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAG
AATGAAGACTGAAGTGTGGACACTATGCCCTTCCTTAGATTTGGGAACAA
AACACCCATGGAANGAGTTACAGAGACAAAGTTTG
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGTTGAAGCTGGGTAAACCATGGA
GATGTGTTCTCAGCAGGGGTCAAGGCTGAGGGCTTCCTCGAGTGAGTGAG
GTCTCACTCTTCTCCAGAGCTTACTATCCAGAAGGGAAACCAACCTCAGG
CTGAAATGATGTTAACACGACTGTTTACTTTATTTTGTTATTTTATTTAT
GATGTGTATGTGTGGGCATGTGTGCCACTGTGCATTTGTGGAGGTCAGAG
GACAGTCTTGCAGAGTCATTTCTCTGTCCACTTTTATGTAGGGTCTGGGA
ATCCATCTTCTTGGCTTGTATCTTTAGATAGCAAGCATTTTTCCCCTTTG
AGTCACCTAAATGCCCCACAAATAACATTAAGTTAATTATTTTGTCCTAA
ATATAATTTTATGAAATCACCATTTATGCCAAAACTTTCCCTCCATTTAT
GATTTGGCTGAGATCTTAAGTCTTAATACTTCAGAGAAATATAAACAATA
AGAAAAGCAGAGAAGAGTCGAGAGGATGGTGTGTGTGTGAAGAATATGAA
TATCTTAGAATTTTAAATCTTAGAATAATAACTAGAAATTTTGACTCAGG
AATCAAGTGGAGACTAACAAAACAAAGGTGGATCATGTGTGGGGAAGGAG
AATGTCAGTTCTTAAAACTAAAAAGGTGGTACCTGGCATGTAAAACCTGT
CTGTGTGTCTGGTGAGGTTGAACCTTATCAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_e08.g1 MSMg01no515_e08.g1 CHROMAT_FILE:
MSMg01no515_e08.g1 PHD_FILE: MSMg01no515_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:31 2005
         (604 letters)



>mm_chr3_33722017_33723021
          Length = 1005

 Score =  895 bits (463), Expect = 0.0
 Identities = 469/471 (99%), Gaps = 1/471 (0%)
 Strand = Plus / Minus

                                                                        
Query: 135  atgttaacacgactgtttactttattttgttattttatttatgatgtgtatgtgtgggca 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 atgttaacacgactgtttactttattttgttattttatttatgatgtgtatgtgtgggca 946

                                                                        
Query: 195  tgtgtgccactgtgcatttgtggaggtcagaggacagtcttgcagagtcatttctctgtc 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  tgtgtgccactgtgcatttgtggaggtcagaggacagtcttgcagagtcatttctctgtc 886

                                                                        
Query: 255  cacttttatgtagggtctgggaatccatcttcttggcttgtatctttagatagcaagcat 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  cacttttatgtagggtctgggaatccatcttcttggcttgtatctttagatagcaagcat 826

                                                                        
Query: 315  ttttcccctttgagtcacctaaatgccccacaaataacattaagttaattattttgtcct 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  ttttcccctttgagtcacctaaatgccccacaaataacattaagttaattattttgtcct 766

                                                                        
Query: 375  aaatataattttatgaaatcaccatttatgccaaaactttccctccatttatgatttggc 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  aaatataattttatgaaatcaccatttatgccaaaactttccctccatttatgatttggc 706

                                                                        
Query: 435  tgagatcttaagtcttaatacttcagagaaatataaacaataagaaaagcagagaagagt 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  tgagatcttaagtcttaatacttcagagaaatataaacaataagaaaagcagagaagagt 646

                                                                        
Query: 495  cgagaggat-ggtgtgtgtgtgaagaatatgaatatcttagaattttaaatcttagaata 553
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  cgagaggatgggtgtgtgtgtgaagaatatgaatatcttagaattttaaatcttagaata 586

                                                               
Query: 554  ataactagaaattttgactcaggaatcaagtggagactaacaaaacaaagg 604
            ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 585  ataactagaaattttgactcaggaaccaagtggagactaacaaaacaaagg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space:   591030
Effective search space used:   591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)