BAC Information

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BAC

Clone NameMSMg01-515H12
Chromosome3 (Build37)
Map Location 57,949,649 - 57,949,956
singlet/doubletsinglet
Overlap geneLOC100040216
Upstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594
Downstream gene4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H12.T7 (MSMg01no515_h12.b1)MSMg01-515H12.TJ (MSMg01no515_h12.g1)
ACCAG587700AG587701
length788782
length of high quality
(start - end)		685 (48 - 732)595 (79 - 673)
definitionCHROMAT_FILE: MSMg01no515_h12.b1 PHD_FILE: MSMg01no515_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:48 2005CHROMAT_FILE: MSMg01no515_h12.g1 PHD_FILE: MSMg01no515_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGAGTGATACTGAATAGCTGAGAAGCACCTACAGAAAT
GTACAACATCCTTATTTATCAGGAAAATGTAAATCAAAATGATCCTGAGA
TTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAG
CAAATGCTGGTGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGCTGGT
GGGACTGCAAGCTGGTGCAACCACTTTGAAAATCAGTCTAGCAGTTCCTC
AGAAAATTGGACATAGTACTGCCTGAGGACCCAGCTATACCACTCCTGGG
CATATACCCAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCATTA
TGTTCATAGCAGCCATATTTATAATAGCCAACACCTGGAAAGGACCCAGA
TGTCCCTCAACAGAGATATGGATCCAGAAAATATGATATATTTACTCAAT
GAAGTGCTACTTAGCTATTAAAAACAATGACTTTATGAAATTCGCAGGCA
AATGGATGGATCTATAAAATATCCTGAGTGAGGTAACTCAGTCGCAAAAG
AACACACATTGTAGGTACTCACTGATAAGTGGATATTAGGCAAGTGTGTG
GAATATCCAAAAGACAACTCACAGACCACATGCCGCTCAAGAGGAAGGAA
GACCAAATAGTGGATGCTTTAGTTCTACTTAGAAAAGGGACAAAATAATC
ANGGGAATTANAGGGTGGGAGGNACTTTGAGGAAAAAN

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGGATAGTTATCCTCTATGTT
ATTCTGTTGGGCCCATCTCTACAGACATTCCATTACTGGGTTGTGGGGGC
TGGAAACTTGCTGGGGAGGTCTGGAACTGTTACTGAGGAAGTAGCTGAGG
AAGTCTGGAAACTGCTGCTAACCTATTGTCCTTGCCTCAGGCCGGGTGAC
AGGGCAGCTTCTGAGGCAACTCTGGACTGACCTAGAATTGCTCAGTTCTT
GGGAACAGAGATTTAGGCCTAGTCTCCTTAACTGCCCATTTGTAGCCTGT
CATGGAATCAGCCTAGCATTCTCACTACTTTCTTGAGAATCTGGCTCTGG
AATTGGGTTACGGCTCACCCTTCTTCAGACTCGGCATGCTTTAAAAGGCT
ATGTCAGAGGTTAGAAACAAAAGAGATTATTGGCTTATTAGTTATTAGGC
ATGGTTAAAAATCTGTGACAAAAAGTTAACTTAAAACTTGTAACTTGGGG
TTGGTAATTAAAAACCTCTGCTTAGATGATCTTAAAGAGACCATGTGACA
TTCTGTTCTGGGTAGCTTGCTGCCACCTTGAGCAGCAATACATGGTTGGT
CGTTATCTTTGATAGAGATGGAGAAGGCAGACATCATAGCTTCACCACCA
TTTTGACCAANGGCAACTATGGTGGTATTGGCTGGCCAAGATCCTCAGAG
ATGCTTTTAAGCTGGGATAAGGTTTTGTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h12.g1 MSMg01no515_h12.g1 CHROMAT_FILE:
MSMg01no515_h12.g1 PHD_FILE: MSMg01no515_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:48 2005
         (595 letters)



>mm_chr3_57948962_57949956
          Length = 995

 Score =  569 bits (294), Expect = e-166
 Identities = 303/308 (98%), Gaps = 4/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 292 tctcactactttcttgagaatctggctctggaattgggttac----ggctcacccttctt 347
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 995 tctcactactttcttgagaatctggctctggaattgggttacgtatggctcacccttctt 936

                                                                       
Query: 348 cagactcggcatgctttaaaaggctatgtcagaggttagaaacaaaagagattattggct 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 cagactcggcatgctttaaaaggctatgtcagaggttagaaacaaaagagattattggct 876

                                                                       
Query: 408 tattagttattaggcatggttaaaaatctgtgacaaaaagttaacttaaaacttgtaact 467
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tattagttattaggtatggttaaaaatctgtgacaaaaagttaacttaaaacttgtaact 816

                                                                       
Query: 468 tggggttggtaattaaaaacctctgcttagatgatcttaaagagaccatgtgacattctg 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tggggttggtaattaaaaacctctgcttagatgatcttaaagagaccatgtgacattctg 756

                                                                       
Query: 528 ttctgggtagcttgctgccaccttgagcagcaatacatggttggtcgttatctttgatag 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttctgggtagcttgctgccaccttgagcagcaatacatggttggtcgttatctttgatag 696

                   
Query: 588 agatggag 595
           ||||||||
Sbjct: 695 agatggag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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