BAC Information

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BAC

Clone NameMSMg01-515I22
Chromosome5 (Build37)3 (Build37)
Map Location 135,692,029 - 135,692,64573,951,012 - 73,951,553
singlet/doubletsingletsinglet
Overlap geneBaz1b
Upstream geneGtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069
Downstream geneFzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515I22.T7 (MSMg01no515_i22.b1)MSMg01-515I22.TJ (MSMg01no515_i22.g1)
ACCAG587768AG587769
length762757
length of high quality
(start - end)		688 (51 - 738)542 (85 - 626)
definitionCHROMAT_FILE: MSMg01no515_i22.b1 PHD_FILE: MSMg01no515_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:55 2005CHROMAT_FILE: MSMg01no515_i22.g1 PHD_FILE: MSMg01no515_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:55 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,692,029 - 135,692,645)(73,951,012 - 73,951,553)
sequence
NAAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGAGTTCTTTACTTTGAGTGGTGGGCCATTTAACGACT
TCTCCAAGTGCACATGACACCACAGCTTAGGGTTTAGTGGGGAACTCAGA
GAAGAACTGTCTCTCTTAGGTTTCTTTGAGGGCTTCCTGTCTGGAGATCC
AGTATTCCTCCTCTTGGTAGAGGGATTGAGAGTCATATACTAAAATTTAA
GAACAGGAGCAAAATTACTTTTAAAACTATGTGTAGCAAGCAGTATCTAA
GCACTGTAAAGCCACACATCCATCGATACAACATAGTAAGACCTGTCTGA
AAGCAAAGCTAACACTTGACAGATGTGGTGGAGGCAGTTATCAGCAATCC
CCAAACTTAGGAGGTGGAAGCAAGAGAATTAAGACTGTCTCAATGTCCCC
CATCCCTCCAAATGTGCGCTGTGGACTGTACAGCTCAGTAATGGGATGCT
TCTCTATAATATGTGAGGACTTGGGCTCTACCTCCAGCAGTTCAACCAAA
ACCTAGCACCCCCCTAATGTTAGATCTAGCTTTATGTTTCCACATGCACT
AGTGGCTCTCAAATATTTTACTGAACTCTATGAACACTTTCTCCAGCAAC
AACATATAAAAATTATGCATATAGTTTTCAAAGTCTATCCATGGGCCCTA
GATTAAGAAAGAACTGATCTAAAACAGAAGCATCTAAGATTCCAAGAAGT
GCTACTCTCAAN

NNNNNNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCTTCAAAAGGAA
ATCTTTGGGCACACAATGAGGTCAATTTGAATATAATCCTACTGCCAACA
AGATTAAACCTCAGCATCTATTCTCCACTTTCAGAGTTAAATTAGAATTT
AGACATGAAGACACTCATATGTTTCATTCATGTCAATTTGACTTTGTAGC
TTACTCTGTATCCATACAATGATGCCACTAATGTACAACTTGGTGACCTT
AAACAAGAAGGCAACACATAATTACAGATCATTCAAGTATTTTATTGGAA
AATATGGAATTAAAAATAATTATGCCTGTAAATATAAATAAAATGTAAGC
TATGGGTTGAGATAATTTTACCATATGTTAATTCCATGAAACTGTGATCT
TTACAAAGTATAAAATATTATCTATACTTTTGATGATCTCTATCATAGCC
CAACTCACAGAACCTCTTCAAAACATAACCAATCCTGATTTCTGACACTT
AATACAACATTTTAAAAGTAGCTTTGACTACTTTGAAGTATTTGTGAATT
TTATTCCTTGCATCAGCAACATGCAGGAACCCAAATGCAATCACAGCCAT
CATACTGAATAGCACAGAAATAAAGTCAAATCACAGATATTTGCTTAAGT
TCCTTACAATGGTACTTTTTTTAGTTATTCCCGATACACACACACATACA
CATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_i22.b1 MSMg01no515_i22.b1 CHROMAT_FILE:
MSMg01no515_i22.b1 PHD_FILE: MSMg01no515_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
         (688 letters)



>mm_chr5_135692029_135693116
          Length = 1088

 Score = 1185 bits (613), Expect = 0.0
 Identities = 616/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgagttctttactttgagtggtgggccatttaacgacttctccaagtgcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggaattctttgagttctttactttgagtggtgggccatttaacgacttctccaagtgcac 558

                                                                       
Query: 64  atgacaccacagcttagggtttagtggggaactcagagaagaactgtctctcttaggttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgacaccacagcttagggtttagtggggaactcagagaagaactgtctctcttaggttt 498

                                                                       
Query: 124 ctttgagggcttcctgtctggagatccagtattcctcctcttggtagagggattgagagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctttgagggcttcctgtctggagatccagtattcctcctcttggtagagggattgagagt 438

                                                                       
Query: 184 catatactaaaatttaagaacaggagcaaaattacttttaaaactatgtgtagcaagcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catatactaaaatttaagaacaggagcaaaattacttttaaaactatgtgtagcaagcag 378

                                                                       
Query: 244 tatctaagcactgtaaagccacacatccatcgatacaacatagtaagacctgtctgaaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatctaagcactgtaaagccacacatccatcgatacaacatagtaagacctgtctgaaag 318

                                                                       
Query: 304 caaagctaacacttgacagatgtggtggaggcagttatcagcaatccccaaacttaggag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caaagctaacacttgacagatgtggtggaggcagttatcagcaatccccaaacttaggag 258

                                                                       
Query: 364 gtggaagcaagagaattaagactgtctcaatgtcccccatccctccaaatgtgcgctgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtggaagcaagagaattaagactgtctcaatgtcccccatccctccaaatgtgcgctgtg 198

                                                                       
Query: 424 gactgtacagctcagtaatgggatgcttctctataatatgtgaggacttgggctctacct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gactgtacagctcagtaatgggatgcttctctataatatgtgaggacttgggctctacct 138

                                                                       
Query: 484 ccagcagttcaaccaaaacctagcacccccctaatgttagatctagctttatgtttccac 543
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccagcagttcaaccaaaacctaccacccccctaatgttagatctagctttatgtttccac 78

                                                                       
Query: 544 atgcactagtggctctcaaatattttactgaactctatgaacactttctccagcaacaac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atgcactagtggctctcaaatattttactgaactctatgaacactttctccagcaacaac 18

                            
Query: 604 atataaaaattatgcat 620
           |||||||||||||||||
Sbjct: 17  atataaaaattatgcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_i22.g1 MSMg01no515_i22.g1 CHROMAT_FILE:
MSMg01no515_i22.g1 PHD_FILE: MSMg01no515_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
         (542 letters)



>mm_chr3_73950812_73951753
          Length = 942

 Score = 1017 bits (526), Expect = 0.0
 Identities = 538/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcttcaaaaggaaatctttgggcacacaatgaggtcaatttgaatataatcctactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acagcttcaaaaggaaatctttgggcacacaatgaggtcaatttgaatataatcctactg 683

                                                                       
Query: 61  ccaacaagattaaacctcagcatctattctccactttcagagttaaattagaatttagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccaacaagattaaacctcagcatctattctccactttcagagttaaattagaatttagac 623

                                                                       
Query: 121 atgaagacactcatatgtttcattcatgtcaatttgactttgtagcttactctgtatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgaagacactcatatgtttcattcatgtcaatttgactttgtagcttactctgtatcca 563

                                                                       
Query: 181 tacaatgatgccactaatgtacaacttggtgaccttaaacaagaaggcaacacataatta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 tacaatgatgccactaatgtacaacttggtgaccttaaacaagaaggcaacaaataatta 503

                                                                       
Query: 241 cagatcattcaagtattttattggaaaatatggaattaaaaataattatgcctgtaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cagatcattcaagtattttattggaaaatatggaattaaaaataattatgcctgtaaata 443

                                                                       
Query: 301 taaataaaatgtaagctatgggttgagataattttaccatatgttaattccatgaaactg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 442 taaataaaatgtaagctatgggttgagataattttaccatatgttaattccatgcaactg 383

                                                                       
Query: 361 tgatctttacaaagtataaaatattatctatacttttgatgatctctatcatagcccaac 420
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 382 tgatctttacaaagtataaaatattatctatgcttttgatgatctctatcgtagcccaac 323

                                                                       
Query: 421 tcacagaacctcttcaaaacataaccaatcctgatttctgacacttaatacaacatttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcacagaacctcttcaaaacataaccaatcctgatttctgacacttaatacaacatttta 263

                                                                       
Query: 481 aaagtagctttgactactttgaagtatttgtgaattttattccttgcatcagcaacatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagtagctttgactactttgaagtatttgtgaattttattccttgcatcagcaacatgc 203

             
Query: 541 ag 542
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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