Query= MSMg01no515_k09.b1 MSMg01no515_k09.b1 CHROMAT_FILE:
MSMg01no515_k09.b1 PHD_FILE: MSMg01no515_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:03 2005
(633 letters)
>mm_chr3_86680757_86681789
Length = 1033
Score = 930 bits (481), Expect = 0.0
Identities = 525/545 (96%), Gaps = 13/545 (2%)
Strand = Plus / Minus
Query: 89 gggcggtggtggtggcggcacacgcctttaatcccaggactcaggaggcagagacaggcg 148
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1031 gggcggtggtggtggcggtgcacgcctttaatcccagcactcaggaggcagagacaggcg 972
Query: 149 gatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 gatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctac 912
Query: 209 acagagaaaccctgtcttgaaaaaccagaaacaaacaaacaaacaaacaaaaacaaaaac 268
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 911 acagagaaaccctgtcttgaaaaaccagaaacaaacaaacaaacaaacaaaaac-aaaac 853
Query: 269 aaaaacaaaaacaaaaacaaaaccaaaaccccaacaacgaatcctttatctggcccttta 328
|||||||| |||||| || || |||||||||||||||||||||||||||||
Sbjct: 852 -aaaacaaa---aaaaac----cccaa----caacaacgaatcctttatctggcccttta 805
Query: 329 gtatggcttttctctgttgaaattttttaactttctaaaatgctcacaagagcccctaat 388
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtatggcttttctctgttgaaaatttttaactttctaaaatgctcacaagagcccctaat 745
Query: 389 tacagtgaaagacagatctcaaactcttgtgcaagccttcaagccatggccttcctgtcc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tacagtgaaagacagatctcaaactcttgtgcaagccttcaagccatggccttcctgtcc 685
Query: 449 ctgtggcagttctgttccaagtacggctttatccaccctatattgccatttctcagaaaa 508
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 684 ctgtggcagttctgttccaagtacggctgtatccaccctataatgccatttctcagaaaa 625
Query: 509 ggaggtagagatgagaaatcccatagaaactttttaaaagtaacataattacattccaga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaggtagagatgagaaatcccatagaaactttttaaaagtaacataattacattccaga 565
Query: 569 ggcctcagaaatcttctgtggccatctagttgcagttgaggtataaagcatcaaccacgc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcctcagaaatcttctgtggccatctagttgcagttgaggtataaagcatcaaccacgc 505
Query: 629 tcagg 633
|||||
Sbjct: 504 tcagg 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_k09.g1 MSMg01no515_k09.g1 CHROMAT_FILE:
MSMg01no515_k09.g1 PHD_FILE: MSMg01no515_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:03 2005
(629 letters)
>mm_chr3_86552299_86553328
Length = 1030
Score = 1172 bits (606), Expect = 0.0
Identities = 624/630 (99%), Gaps = 1/630 (0%)
Strand = Plus / Plus
Query: 1 tcctgtgttagtctcctacgtgccaggatcctaggtgtgtgctgccactcccacaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgtgttagtctcctacgtgccaggatcctaggtgtgtgctgccactcccacaagttc 260
Query: 61 ttacaaggcttatacttgtaattaattataatattgaccttttactgtggcattggaaac 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ttacaaggcttatacttgtaattaattataatattgaccttttactgtagcattggaaac 320
Query: 121 acactcaggctcctccaatgaagcacatcccagccctgtgataatctctaacaatatttc 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 acactcaggctcctccaatgaagcgcatcccagccctgtgataatctctaacaatatttc 380
Query: 181 tgaaatataggaaatataaaagaagcccttacagaaaataagtcttcagccaactggatg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tgaaatataggaaatataaaagaagcccttacagaaaataagtattcagccaactggatg 440
Query: 241 ggtgtttccccttctgatatctcaggtgttgatgttctaagatt-gtccagaagatccat 299
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 441 ggtgtttccccttctgatatctcatgtgttgatgttctaagatttgtccagaagatccat 500
Query: 300 tcctattcttttgttttatagctgagaaatgttatgtaaggaagtagatgggaaagggaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctattcttttgttttatagctgagaaatgttatgtaaggaagtagatgggaaagggaa 560
Query: 360 atgttttgttttaatagtgtcatatagcaaaattcatgtagtaagctattaagaagtacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttttgttttaatagtgtcatatagcaaaattcatgtagtaagctattaagaagtacc 620
Query: 420 ttattgtctaaaattaggctttctttcattttaacagtgctgttgaaacttatttttaat 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttattgtctaaaattaggccttctttcattttaacagtgctgttgaaacttatttttaat 680
Query: 480 gatttgttaattggcagtgtgatgagatccccatttcagtttctcgatgccatctgacct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttgttaattggcagtgtgatgagatccccatttcagtttctcgatgccatctgacct 740
Query: 540 acaaaatgatcacccctaggcactcactttctagtgtcatcaatagtttccattgctcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaaatgatcacccctaggcactcactttctagtgtcatcaatagtttccattgctcct 800
Query: 600 gaggctcccaagagattttaatccccagag 629
||||||||||||||||||||||||||||||
Sbjct: 801 gaggctcccaagagattttaatccccagag 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
