GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGTGTACCTATTTATAGTACTTGTAGGTTAAGTACAGCTTAT
TCATTAGTGTACCAAAACCAGAATACATTTCATTTTAGTTATCTATGTAA
TATTAGAGCTAAATGTGAGTGAACAACTATTTTCATGAAAACTTCTTACT
GCCATCTTACTTGGTCCTCCAATGAACATACATTTGAAGATTCCATATAT
TAAACTTTGATTTTTAACATACTGTACATTTTTGAGACATGGAATAGAAT
TGCATCTAGGGGGCATAGAAATAAAGATATTTGAAATACATCCAACTAAT
GGGGTGGAACTGAGCCAGTCTCTTTGGTGTTAGCCAACAAATAGAACATA
GCTAAGATAGTGCACTTCTGAGATTTTGTAACATGGTTAATTTAGATACT
TAGTGCTGTAGCCTATTGTGAGTCTGTCAAATGTTTCCCCTTTGAAAGTA
GTATGGCCACCCATATGATTTTTGGGTTTTTTTGTATTCAAAGTATTAAA
CATGTGTCCCAAAGACATCCATTTTTTTTTCATTCTGCCATTTCACAATA
TCTTTTTATTCTTCATAAGTCAGATTAGGACTGTTTACAGAAAATCTGGA
AAGACAATAGCCAAAGTTCTTAACTAATTTTTATCCATCTCAGTTCTTAA
TAACTTAGAAATTAGTTTTATAGAAAATCTAGAAAGACAGAAGGCAGTGT
TCTATTTTGTACCCATCTCCCACCGTTCCTCCTTACCTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCAATTTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTTTTTGTCTTATTGAAGGTGTCTTTTATCTTGC
AGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCAATCTTACA
GCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATC
TTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGAAGCTCCTTGATCCACTTAAATTTGACCTTAGTACAAGGAGAT
AAGTATGGATCAATTCACATTCTTCTACACGATAACAACCAGTTGTGCCA
GCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTC
CCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCT
TCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGC
AGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGA
TTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGT
TTTTTGGTATTCCAGATGAATTTGCAAATTGG

Query= MSMg01no515_l05.b1 MSMg01no515_l05.b1 CHROMAT_FILE:
MSMg01no515_l05.b1 PHD_FILE: MSMg01no515_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:07 2005
         (654 letters)



>mm_chr3_16117645_16118699
          Length = 1055

 Score = 1203 bits (622), Expect = 0.0
 Identities = 644/652 (98%), Gaps = 3/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtgtacctatttatagtacttgtaggttaagtacagcttattcattagtgta 64
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtgtacctatttatagtggttgtaggttaagtacagcttattcattagtgta 264

                                                                       
Query: 65  ccaaaaccagaatacatttcattttagttatctatgtaatattagagctaaatgtgagtg 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaaaccagaatacatttcattttggttatctatgtaatattagagctaaatgtgagtg 324

                                                                       
Query: 125 aacaactattttcatgaaaacttcttactgccatcttacttggtcctccaatgaacatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaactattttcatgaaaacttcttactgccatcttacttggtcctccaatgaacatac 384

                                                                       
Query: 185 atttgaagattccatatattaaactttgatttttaacatactgtacatttttgagacatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttgaagattccatatattaaactttgatttttaacatactgtacatttttgagacatg 444

                                                                       
Query: 245 gaatagaattgcatctagggggcatagaaataaagatatttgaaatacatccaactaatg 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaatagaattgcatctagggg-catagaaataaagatatttgaaatacatccaactaatg 503

                                                                       
Query: 305 gggtggaactgagccagtctctttggtgttagccaacaaatagaacatagctaagatagt 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 gggtggaactgagccagtctctttagtgttagccaacaaatagaacatagctaagatagt 563

                                                                       
Query: 365 gcacttctgagattttgtaacatggttaatttagatacttagtgctgtagcctattgtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcacttctgagattttgtaacatggttaatttagatacttagtgctgtagcctattgtga 623

                                                                       
Query: 425 gtctgtcaaatgtttcccctttgaaagtagtatggccacccatatgatttttgggttttt 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 gtctgtcaaatgtttcccctttgaaagtagtatggccacccatatgatttttggtttttt 683

                                                                       
Query: 485 ttgtattcaaagtattaaacatgtgtcccaaagacatccattttttttt--cattctgcc 542
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 684 ttgtattcaaagtattaaacatgtgtcccaaagacatccatttttttttttcattctgcc 743

                                                                       
Query: 543 atttcacaatatctttttattcttcataagtcagattaggactgtttacagaaaatctgg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atttcacaatatctttttattcttcataagtcagattaggactgtttacagaaaatctgg 803

                                                               
Query: 603 aaagacaatagccaaagttcttaactaatttttatccatctcagttcttaat 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaagacaatagccaaagttcttaactaatttttatccatctcagttcttaat 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space:   672980
Effective search space used:   672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)