NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACTAAGGCACCTTTATGGAAACTAAATTTTTAAAAATATA
TTCTAAAATGAATGACATAACTTAAATTGCAATTTTTGTCTCATATGCAT
ACAAAATACCACAATTTTAAAATAAGCAGATGATAATGCAGACACAGCAC
TCTATAAAAAGATACTGATATTTAGAGTATTTCATTTTAAGTTCTACAAG
TGAAGGGTCATTCTCAACTACCATCCTATCAAACTGGAGAATCTAGTTAC
TATAATCTTGAAATTCAAGAATGAATGAGCAGGTATTTTGTTTTTTGGGT
TTTGTTGTTGTTGATCTTATTTTGTTTTTTGTTTTTTTTTTGTCAACAAA
AGTTAAGCATGATCTAATGGGAACACTGCATCTTTTTATAATGATGTTTT
CTTCTCTTACCAAAAGTTCATGTAAGCTCTAGGCTACAAGTGAGAGTTAG
AAAATTTAGAAGATTCATTTGTCATACTACACATATCACAAAAGCAAGCA
GTTCATACTTCGTATAACAATTTGTATAAGGTTAAAAAATCATGTCAGTT
TTAGAAATGAATCAATCTTTAGGTAGACAAACTCTAATAGGAACACTTCT
TGTTTTTAAGACATGCTATGTGGTATCACATACATTCAAAAAATGGATGA
TCATGGCTTTTTTGTGAGGTGTGCGCCTTGTACAGAGCCCTGTTGTTTTA
TATGTATGGGTTCATTGCCCTATCTATTATAGAG

NGGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGAAAGGTAGATAAAGTAC
TCAAATAGCATCTTGGGGTGACGATAGCCAATGAGACAAGATGATCAGAT
GTCTTTGGCCGGTAAGAACCTTGGTAAAACTGGGTTTTTAGAAGACCTTT
GGTAAGGTCCAAGAATTGTGATTAAACTTTGGCAATGAAGAGAATACTGG
TCAGGGAGAATGTTTGTTTGTTTATTTGGTTTTTCAAAACAGGTTTTCTC
TGTATAGCTCTGGCTGTCCTGGAACTCATTCTGTAGACAAGGCTGGCCTC
AAACTGTCAGAGATCTGCTTGCCTCTGTCTCCTGAGTGCTGGGATTAAAA
GCTCATGCCACCACCACCTAGTGTCAGGAAGAATGTAAAATATGGTTATT
AATAAAACTTTTCCTGGTATTAGAACAGTGATATGAGTTGTCATTTTATT
GAGCACTTGCTGTTCCCTTGTTTAATACAAAGGCACAGTTAAGCTGATCA
GGATCTGAGGTGTGTACCTAGAAATTGATTTCATTACAGGCAATGTACAA
GAACTTATGATCCTATTCATATCTGCTTATAAAGAAGAGGTGAAAAGCAA
GTTTGTAATTTCCCATGAGAGAAAACCATAAATTCAAGGAATGAATGACT
AAATTCATCACTGAAGATAAATGGAAATGCTCAGATTTGCAATCTTCAGG
TGTTGTGTCTGGGCCAGTAAA

Query= MSMg01no515_l14.b1 MSMg01no515_l14.b1 CHROMAT_FILE:
MSMg01no515_l14.b1 PHD_FILE: MSMg01no515_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:09 2005
         (603 letters)



>mm_chr3_114826892_114827894
          Length = 1003

 Score = 1123 bits (581), Expect = 0.0
 Identities = 595/601 (99%), Gaps = 4/601 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactaaggcacctttatggaaactaaatttttaaaaatatattctaaaatgaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactaaggcacctttatggaaactaaatttttaaaaatatattctaaaatgaat 264

                                                                       
Query: 65  gacataacttaaattgcaatttttgtctcatatgcatacaaaataccacaattttaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacataacttaaattgcaatttttgtctcatatgcatacaaaataccacaattttaaaat 324

                                                                       
Query: 125 aagcagatgataatgcagacacagcactctataaaaagatactgatatttagagtatttc 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 aagcagatgataatgcagacacagcactctataaaaagacactgatatttagagtatttc 384

                                                                       
Query: 185 attttaagttctacaagtgaagggtcattctcaactaccatcctatcaaactggagaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttaagttctacaagtgaagggtcattctcaactaccatcctatcaaactggagaatc 444

                                                                       
Query: 245 tagttactataatcttgaaattcaagaatgaatgagcaggtattttgttttttgggtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagttactataatcttgaaattcaagaatgaatgagcaggtattttgttttttgggtttt 504

                                                                       
Query: 305 gttgttgttgatcttattttgttttttgtttt--ttttttgtcaacaaaagttaagcatg 362
           |||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||
Sbjct: 505 gttgttgttgatcttattttgtttt--gttttgtttttttgtcaacaaaagttaagcatg 562

                                                                       
Query: 363 atctaatgggaacactgcatctttttataatgatgttttcttctcttaccaaaagttcat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atctaatgggaacactgcatctttttataatgatgttttcttctcttaccaaaagttcat 622

                                                                       
Query: 423 gtaagctctaggctacaagtgagagttagaaaatttagaagattcatttgtcatactaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtaagctctaggctacaagtgagagttagaaaatttagaagattcatttgtcatactaca 682

                                                                       
Query: 483 catatcacaaaagcaagcagttcatacttcgtataacaatttgtataaggttaaaaaatc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catatcacaaaagcaagcagttcatacttcgtataacaatttgtataaggttaaaaaatc 742

                                                                       
Query: 543 atgtcagttttagaaatgaatcaatctttaggtagacaaactctaataggaacacttctt 602
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 743 atgtcagttttagaaatgaatcaatctttaggtaggcaaactctaataggaacacttctt 802

            
Query: 603 g 603
           |
Sbjct: 803 g 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)