Query= MSMg01no516_a02.b1 MSMg01no516_a02.b1 CHROMAT_FILE:
MSMg01no516_a02.b1 PHD_FILE: MSMg01no516_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:34 2005
(692 letters)
>mm_chr3_154371540_154372631
Length = 1092
Score = 1257 bits (650), Expect = 0.0
Identities = 677/688 (98%), Gaps = 4/688 (0%)
Strand = Plus / Minus
Query: 5 gaattcattatgcggcaaggttggcacccaaagtaaaagcagacaccaggaaaggcaggt 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattcattacgcggcaaggttggcacccaaagtaaaagcagacaccaggaaaggcaggt 630
Query: 65 gcttggctataatgtaccaccaattacatatcttcaactgcttcctaaaactgtaagaaa 124
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 629 gcttggctataatgtaccaccaattacatatcttcaactgctttctaaaaatgtaagaaa 570
Query: 125 acaagatgaaacattatagctgaccaaactggaatgcactacataaaaatggatgtttcc 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 569 acaagatgaaacattatagctgaccaaactggaatgcacgacataaaaatggatgtttcc 510
Query: 185 acactgagagttgtccatttgttcttctagatctcctgtctaccttctctctctgaggag 244
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 509 acactgagagttgtccatttgttcttctagatcccctgtctaccttctctgtctgaggag 450
Query: 245 ctctgggccctgtaagcaatttcttaaggaatttactaaccaacctcaggactgaaatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctctgggccctgtaagcaatttcttaaggaatttactaaccaacctcaggactgaaatta 390
Query: 305 gattctaccaaggagaagaaggatatcagagaagattggaagatgaaatggaggccttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gattctaccaaggagaagaaggatatcagagaagattggaagatgaaatggaggccttta 330
Query: 365 tttccataatcctgcagggcagaaatggtttctaccaccgaagtgtttatgcttctatgg 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 tttccataatcctgcagggcagaaatggtttctaccacctaagtgtttatgcttctatgg 270
Query: 425 ggaagtccttacctgctatgggacctacctacttcttctagaactcaatccttcccatcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggaagtccttacctgctatgggacctacctacttcttctagaactcaatccttcccatcc 210
Query: 485 agactcctcttcaacctagggactgtggctttccattgtgctgaccccagcaggcttacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agactcctcttcaacctagggactgtggctttccattgtgctgaccccagcaggcttacc 150
Query: 545 atccctagttggcttttcttcaccctgctgtatcttcctaaatagtttctttattaaaca 604
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 149 atccctagttggcttttcttcaccctgctgtatcttcctaaatagttt----attaaaca 94
Query: 605 actttgtaattactctatttgtatgagccatctgtttcctgctgagcccccaacagagac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 actttgtaattactctatttgtatgagccatctgtttcctgctgagcccccaacagagac 34
Query: 665 actttccaatcaagaatgtactgcagcg 692
||||||||||||||||||||||||||||
Sbjct: 33 actttccaatcaagaatgtactgcagcg 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a02.g1 MSMg01no516_a02.g1 CHROMAT_FILE:
MSMg01no516_a02.g1 PHD_FILE: MSMg01no516_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:34 2005
(675 letters)
>mm_chr3_154225061_154226135
Length = 1075
Score = 1100 bits (569), Expect = 0.0
Identities = 647/677 (95%), Gaps = 11/677 (1%)
Strand = Plus / Plus
Query: 1 agtgcctctttttctgtgatagatacatagacagcaaaatctgggtgaatgtccagcctt 60
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agtgcctctttttctgtgatagacacatagacagcaaaatctgggtgaaagtccagcctt 260
Query: 61 tcagagttgataattgttgataattaatgctgactattcaattttcaaaaagattcacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagagttgataattgttgataattaatgctgactattcaattttcaaaaagattcacgg 320
Query: 121 tggagaattttaaagtacaggctctagaaacagggacatgcttgtcagtaaaagcaaggt 180
||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cggacaatttaaaagtacaggctctagaaacagggacacgcttgtcagtaaaagcaaggt 380
Query: 181 atgtgtacctgtgctgcattagagcaaagcagtggatgttgcaacacatttcg-ggtctt 239
||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||
Sbjct: 381 atgtgtacctgtgctgcattagaacaaagcagtggatattgcaacacattt-gtggtctt 439
Query: 240 tttttataggaactccccttccccacacccaggaacttctaaatagatacctttgttacc 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 tttttataggaactccccttccccacacccaggaacttctaa-------cctttgttacc 492
Query: 300 aacagtttgtctgatagacttttgcagcagtctgctttcccttgctgttacaaaatgttc 359
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 493 aacagtttgtctgatagacttttgccgtagtctgctttcccttgctgttacaaaatgttc 552
Query: 360 tgactcaaaccaacctgtggaggcttattatcttatccttagagtcagtgcaaggacttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgactcaaaccaacctgtggaggcttattatcttatccttagagtcagtgcaaggacttg 612
Query: 420 agcaagagtggagggggaaccacagaggatgctgcttgctggctcgctcacaggctcac- 478
||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |
Sbjct: 613 agcaagagtggagggagaaccattgaggatgctgcttgttggctcgctcacaggctc-ct 671
Query: 479 actcacctggctttcttacgcagcccaggtcctaggaatggtgctacccaccatgggttt 538
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 672 actcacctggctttcttacacagcccaggtcctaggaatggtgctatccaccatgggttt 731
Query: 539 ggccatcctaactcagccaaacaatagaatctctcacaggctaacctgatccaaacagat 598
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 732 ggccatcctaactcagccaatcaatagaatctctcacagtctaacctgatccaaacagat 791
Query: 599 cttggaatcaggttccctctccacaggtaactctacgttataggaagttgacaatgaaat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttggaatcaggttccctctccacaggtaactctacgttataggaagttgacaatgaaat 851
Query: 659 tcaaccagaacagcttg 675
||||||||||| |||||
Sbjct: 852 tcaaccagaacggcttg 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
