Query= MSMg01no516_a11.b1 MSMg01no516_a11.b1 CHROMAT_FILE:
MSMg01no516_a11.b1 PHD_FILE: MSMg01no516_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:35 2005
(630 letters)
>mm_chr3_88084384_88085413
Length = 1030
Score = 623 bits (322), Expect = 0.0
Identities = 328/330 (99%)
Strand = Plus / Minus
Query: 301 taaaggcactttaaataaaacatcgctgaaagagagcacacagatccatacaccagacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 taaaggcactttaaataaaacatcgctgaaagagagcacacagatccatacaccagacta 971
Query: 361 acacagggacaggttttgagtatacgggctatgggaatgccaaagttccaggaggcattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 acacagggacaggttttgagtatacgggctatgggaatgccaaagttccaggaggcattg 911
Query: 421 tttccttgaaactctttgccttgtgagtgcttccagacctcttggcctgtcaagtggact 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 910 tttccttgaaactctttgccttgtgagtgcttccaggcctcttggcctgtcaagtggact 851
Query: 481 tcactggagtgggcgtagcaagcgaaggaatcaacagtggtgatggcagcggcagcagcg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 850 tcactggagtgggcgtagcaagcgaaggaatcaagagtggtgatggcagcggcagcagcg 791
Query: 541 gcagcagcaagagaaatcaactcctttcaagagaaaaggccaagcaaccaaaggttgaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gcagcagcaagagaaatcaactcctttcaagagaaaaggccaagcaaccaaaggttgaac 731
Query: 601 gatcttcctcttgctgtgtcctcttgaatc 630
||||||||||||||||||||||||||||||
Sbjct: 730 gatcttcctcttgctgtgtcctcttgaatc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a11.g1 MSMg01no516_a11.g1 CHROMAT_FILE:
MSMg01no516_a11.g1 PHD_FILE: MSMg01no516_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:35 2005
(543 letters)
>mm_chr3_87888000_87888942
Length = 943
Score = 971 bits (502), Expect = 0.0
Identities = 534/548 (97%), Gaps = 8/548 (1%)
Strand = Plus / Plus
Query: 1 aaagccagcctggtctacagaggtccctgacagccagggctacacagagaaactctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aaagccagcctggtctacagaggtccctgacagccagggctacacagagaaactctgtct 257
Query: 61 cagaaagaag---aaaaaaaaaagcgaaaaagaaaacaaaacaaagtcttgattagtttc 117
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagaaagaagaaaaaaaaaaaaagcgaaaaagaaaacaaaacaaagtcttgattagtttc 317
Query: 118 aggctcaatagaagacgccatattttccttagacaaggtctctcactgaacctggagcta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggctcaatagaagacgccatattttccttagacaaggtctctcactgaacctggagcta 377
Query: 178 ggctgctggggtcaccagtacttgtggctatgcctggggttttatgtgggtgcagggctt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggctgctggggtcaccagtacttgtggctatgcctggggttttatgtgggtgcagggctt 437
Query: 238 tgagctcaggcccccatgcctgtgtggctagcactctgacctgttgagtcattttccact 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgagctcaggcccccatgcctgtgtggctagcactctgacctgttgagtcattttccact 497
Query: 298 ccctttttatttccttaaaaaaaaaatttttttttaa--tttaacttaatgtatatgatt 355
||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct: 498 ccctttttatttccttaaaaaaa---tttgtttttaaaatttaacttaatgtatatgatt 554
Query: 356 gttttgcctacatgtttgtctgtgtaccgtgtgcatgtctggagcccttggaggccagag 415
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 555 gttttgcctatatgtttgtctgtgtaccgtgtgcatgtctggtgcccttggaggccagag 614
Query: 416 ggggtatcagatccactggaactagagttacagatgcgtgagccgccattcagatgctgg 475
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gggttatcagatccactggaactagagttacagatgcgtgagccgccattcagatgctgg 674
Query: 476 gatcagaattggaaccttttacctctgagccatctctccagcgccccccccccttttttt 535
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 675 aatcagaattggaaccttttacctctgagccatctctccagcgccacccccccttttttt 734
Query: 536 ttcttagc 543
||||||||
Sbjct: 735 ttcttagc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
