GGGGGAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
TCCGCGGAATTCTCTGTGTTTCTAGCATAGTTTTAAATGCCTGCAGTGAT
GCTCTGTTCCTAAGATTAATGCATTGTAATTAATACTGTCACAGAATTAA
TTCTGTCAGAGAAGTTTTAAGTTTTCAATGTAGATCAGTGGTTCTCAATG
TGTAAGTTGTGACCCCTCTGAGAGTTGAATGGCCTTTTCACAGGGCTTAC
ATATCAGATATTCTGCATATCAAAATTTACATTATAATTCATAATTTCAG
CACAATTACAGTTCAGCAGTAGCACAAAAATAACTTAATTGTTGAAGGTC
ATTACACATGAACTGTATTAAAGGTTCACAGGTAGTTTGCTCAACCTAGG
CAGAAGACAAAGCCTGCTCTTTCACAATCTCATGCCTTCCACTTCACTGT
AAAATGTGATGAGATGTCACAGCTGTTGACAGTCATGTTTTTAATATTCC
TTTACATAGTTTCTAATGAACTGCAGCAATGCAGAGAAAGTAGACTTTAC
AATAAGTATTCACCACTAAACAGACATTTGCATGACATCTTATGCCATTC
ATCATTTCCATTGCACTGGAGATTGCTTGTTGATGCTAATAAACTCTAGC
TCTACATGAAACAGACAAAAGTAAGTAGAAGGTCAGCCTTTTCATGGTTT
TGTCTATCCTGATATTGCATAAAATTCCACTTTGCCAGTTCATCTTATAA
A

TTGGTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTTCTCTGTATC
CAATTTTAATAAGGTAATTTGGTTCTTTGGAGTCTAACTTCTTGAGTTCT
TTGTATATATTGGATATTAACCCTTTATCAGATTTAGGATTGGGAAAGAT
CCTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATTAACAGTGTCCTTCG
CAGTTTTATGAGGTCCCATTTGTTGATTCTTCATCTTACAGCACACACCA
ATGGTGTTCTCATCAGGAATTTTTCCCTTGTGCCCATATGTTTGAGGCTC
CTCAACACTTTCTCCTCTACAAGTTTCAGTGTATCAGGTTTTATGTAGAG
GTCCTTGATACACTTGGACTTGAGCTTTGTTCAAGGAGATAAGAATGGGT
CAATTTGCATTTTTCTACAGGCTGACTTCCAGTTGAACCAGCACCATTTG
TTGAAAATGCTGTCTTTTTTCCAGTGGATAGTTTTAGCTCCTTTGTCAAA
GATCAAGTGCCCATATGTGTGTAGGTTCAACTCTAGGTCTTCAATCTATT
GCATTGATCTACCTGTCTGTCACTGTACCAGAACCATGCAGTCTTTTTCA
CAATTGCTCTGTANGTCAACAGCTTGAGGTCAGGGATGATGATTCCCCTA
GAAGTGCTCTTATTGTTGAGAATTGTTTTCACTATCCTGGGTTTTCCATT
ATTC

Query= MSMg01no516_a13.b1 MSMg01no516_a13.b1 CHROMAT_FILE:
MSMg01no516_a13.b1 PHD_FILE: MSMg01no516_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:36 2005
         (698 letters)



>mm_chr3_12748420_12749517
          Length = 1098

 Score = 1268 bits (656), Expect = 0.0
 Identities = 686/698 (98%), Gaps = 7/698 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctctgtgtt---tctagcatagttttaaatgcctgcagtgatgctctgttccta 61
           ||||||||||||| |   |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgtggtaagt--agcatagttttaaatgcctgcagtgatgctctgttccta 261

                                                                       
Query: 62  agattaatgcattgtaattaatactgtcacagaattaattctgtcagagaagttttaagt 121
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaattaatgcattgtaattaatactgtcacagaattaattctgtcagagaagttttaagt 321

                                                                       
Query: 122 tttcaatgtagatcagtggttctcaatgtgtaagttgtgacccctctgagagttgaatgg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 tttcaatgtagatcagtggttctcaatgtgtaagttgtgacccctctgagagttgtatgg 381

                                                                       
Query: 182 ccttttcacagggcttacatatcagatattctgcatatcaaaatttacattataattcat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccttttcacagggcttacatatcagatattctgcatatcaaaatttacattataattcat 441

                                                                       
Query: 242 aatttcagcacaattacagttcagcagtagcacaaaaataacttaattgttgaaggtcat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatttcagcacaattacagttcagcagtagcacaaaaataacttaattgttgaaggtcat 501

                                                                       
Query: 302 tacacatgaactgtattaaaggttcacaggtagtttgctcaacctaggcagaagacaaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 502 tacacatgaactgtattaaaggttcacaggtagtttgctcaacctaggcagaagacaaaa 561

                                                                       
Query: 362 cctgctctttcacaatctcatgccttccacttcactgtaaaatgtgatgagatgtcacag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctgctctttcacaatctcatgccttccacttcactgtaaaatgtgatgagatgtcacag 621

                                                                       
Query: 422 ctgttgacagtcatgtttttaatattcctttacatagtttctaatgaactgcagcaatgc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctgttgacagtcatgtttttaatattcctttacatagtttctaatgaactgcagcaatgc 681

                                                                       
Query: 482 agagaaagtagactttacaataagtattcaccactaaacagacatttgcatgacatct-t 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 682 agagaaagtagactttacaataagtattcaccactaaacagacatttgcatgacat-tgt 740

                                                                       
Query: 541 atgccattcatcatttccattgcactggagattgcttgttgatgctaataaactctagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgccattcatcatttccattgcactggagattgcttgttgatgctaataaactctagct 800

                                                                       
Query: 601 ctacatgaaacagacaaaagtaagtagaaggtcagccttttcatggttttgtctatcctg 660
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 801 ctacatgaaacagacaaaagtaagtagaaggtcagcctttccatggttttgtctatcctg 860

                                                 
Query: 661 atattgcataaaattccactttgccagttcatcttata 698
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atattgcataaaattccactttgccagttcatcttata 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)