Query= MSMg01no516_a20.b1 MSMg01no516_a20.b1 CHROMAT_FILE:
MSMg01no516_a20.b1 PHD_FILE: MSMg01no516_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(648 letters)
>mm_chr3_137174988_137176035
Length = 1048
Score = 1230 bits (636), Expect = 0.0
Identities = 642/644 (99%)
Strand = Plus / Plus
Query: 5 gaattcccttgtctataccctaggatctcctttcttgaatagctctaacttccttcctgc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttgtctagaccctaggatctcctttcttgaatagctctaacttccttcctgc 264
Query: 65 cagtctcctaataccattggcaaagctgttttccatatctgccactttcacagtatatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtctcctaataccattggcaaagctgttttccatatctgccactttcacagtatatct 324
Query: 125 taatgtgagttccctgtgctttcccatggatctactaattgcctaactgtgggtacttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatgtgagttccctgtgctttcccatggatctactaattgcctaactgtgggtacttcc 384
Query: 185 cttgaggagcccagcctgctctacctgtctgttccctctcctactataaccagctgcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgaggagcccagcctgctctacctgtctgttccctctcctactataaccagctgcttt 444
Query: 245 acttattacctattacagaggctattctacaccctccatcctagacaatctggctcctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttattacctattacagaggctattctacaccctccatcctagacaatctggctcctta 504
Query: 305 atgttcctcctgatctcaaagctgcatactgtctattccaagtcatatttgtagaactgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttcctcctgatctcaaagctgcatactgtctattccaagtcatatttgtagaactgg 564
Query: 365 ctgccaaggaagaaatgcgaggttggcacagccttttggacagagctacctgtctgttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgccaaggaagaaatgcgaggttggcacagccttttggacagagctacctgtctgttca 624
Query: 425 ccctaggaaaccccctttcaccaaattattgcattcaccaattagaatgaagctgagaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctaggaaaccccctttcaccaaattattgcattcaccaattagaatgaagctgagaga 684
Query: 485 ccatgcctgatggatttgctacgcaagcttttatctgggcagacaagtgagtctgtattc 544
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccatgcctgatggatttgctatgcaagcttttatctgggcagacaagtgagtctgtattc 744
Query: 545 taggaagaatagcatcaaatgtagggtagaagccggtgttcacttcattcaacagttttc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taggaagaatagcatcaaatgtagggtagaagccggtgttcacttcattcaacagttttc 804
Query: 605 ttccctgttttcaagtctatatttcaaaatgaaagaactctgag 648
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccctgttttcaagtctatatttcaaaatgaaagaactctgag 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a20.g1 MSMg01no516_a20.g1 CHROMAT_FILE:
MSMg01no516_a20.g1 PHD_FILE: MSMg01no516_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(618 letters)
>mm_chr3_137378408_137379424
Length = 1017
Score = 1112 bits (575), Expect = 0.0
Identities = 611/629 (97%), Gaps = 12/629 (1%)
Strand = Plus / Minus
Query: 1 actgtggtgaccctcagtaaagcctgtctgctctgctcccacaagggctgtcgaatactt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 634 actgtggtgaccctcagtaaagcctgtctgctctgctcccacaaggactgtcgaatactt 575
Query: 61 ccttccttgactgaaggaagacctctgcctcccttaacctcctcagagcttatgatttg- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccttccttgactgaaggaagacctctgcctcccttaacctcctcagagcttatgatttgt 515
Query: 120 --------ttagtgctattgaggaagatgactagaattgacagtttttatagtaagttca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtctattattagtgctattgaggaagatgactagaattgacagtttttatagtaagttca 455
Query: 172 cactttctcaaatgtaaatgaaaaaccagtaggaattcaggcaagggttttgaccaacac 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cactttctcaaatgtaaatgaaaaaccagtaggaattcaggcaagggttttgaccaacac 395
Query: 232 tgcatactgtggtctcaatttgagtatctctgacccctgaaattcatgttaaaatccaat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgcatactgtggtctcaatttgagtatctctgacccctgaaattcatgttaaaatccaat 335
Query: 292 tattattattttttttaaatatggaacgcttcacgaatttgtgtgtcatccttgcgcagg 351
| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 334 tctt-tttttttttttaaatatggaacgcttcacgaatttgcgtgtcatccttgcgcagg 276
Query: 352 ggccatgctaatcttctctgtatctttccaattttagtatatgtgctgccgaagcgagca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggccatgctaatcttctctgtatctttccaattttagtatatgtgctgccgaagcgagca 216
Query: 412 ctaaaatccaattctttagggtggtagttttgggaacagggactgatcatgagtatttag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctaaaatccaattctttagggtggtagttttgggaacagggactgatcatgagtatttag 156
Query: 472 aacccttataaatagtatgctggaggatgatggctgcatggtctggttaaggggaaggtt 531
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aacccttataaatagaacgctggaggatgatggctgcatggtctggttaaggggaaggtt 96
Query: 532 tctattgtagatata--agagagagagaacagccagaggcatctagatgagttcagagca 589
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 tctattgtagatataagagagagagagaacagccagaggcatctagatgagttcagagca 36
Query: 590 gagagagaaagaaataagctgaatatggc 618
|||||||||||||||||||||||||||||
Sbjct: 35 gagagagaaagaaataagctgaatatggc 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
