TTTTTTACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTATTTTGGGAGTTTTAGGGTTTGAATTTCAAGAAGAT
TCTAAATTGCAAAAGAAGAGTCAGGCTTGAGCAACTACACATGCTGCTAC
TATCTCTGATGCCTCTGGCTGCTTCCGGCTATGATTTTGTTAATTGTCAC
TACGTGCCTGTGCTGTGCTATAGGCTCTGCTTAGCTCTTTCTTTATCTCT
TCCAATCCATGAAAGAATAGAGCTGTGAAAAACAATAACAACACAGAAGA
GAAAATGAAAAACTGGCCATAAAATCATTTTTAAAGTATTCACGAAAAAT
GAAACATAGTCACCAAGACAGAAATAATTCTTAATCTGCTGTATTGAACA
TGCTACAATAAGACAATTAGCACATGCTACATTGCACATTGTTAATTGCA
GTTAGCATTGTTGATTTGGTGACTGAATAGATAGCCTTCTTAAAAAATTC
AGATTCAATTCCAGATAGTTTTCTAAAAAGAAAAGCTTATCTGAAGAATA
TTTAGAATTTCGAATGTCGCTCTCAAGAATATCTCTGCAGTGCCTCTCTG
TCTTATGGAACCAAAATGAAGCATTCAATCCAAGGGCAGAGATATGCTGG
GCTGGGACAAAAGCCACATTGAGGAACCTCAGCTTCTGCTGGACCTTGTG
TAAGGCTGAGTAAAGTGTCAGAACTCCAGCATGGCAGAGCT

NNNCCCACATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGATAGAGCCAGGCAT
GGAGAGACTTGCCAAAAAAGATGTGACCAGACAAATGTATGGTGCTTGAG
CACAAGTAACTAGTCACATGACAAAATATAGGTTAACATATTTGGGTTAT
TTAAGTTATATCTAGTTAGAGAAGAACTGAGCTATATGTACTTGGACAAA
GTATTTGTAAGTGTATTTTCAGTCTGAGTCTTATTTCTGGAAGCATGGGG
CTGGGAAGTAGAACCAGGGCTAACTTCAATAGTTTGTTTTTTTAAAAGAG
TATTGGTAGGTGTTTATTAGTACCCATGGTCAAAGAAGAAACAAAAGGAA
ATAAATTAGATTCAGGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCCCATCTACTCCTTCTGGGTATTTTTTCTTCTTTTTGTTTTAGAGAT
TTTATTTTATTTTTTTTAATTTTATTTTATTTTTATTAGGTATTTTCCTC
GTTTACATTTTCAATGCTATCCCAAAATTCTGCCAGACCCACCCCCCCAA
TCCACTACCCACCCACTCCCCCGTTTTGGCCCTGGCGTTCCCCTGTACTG
GGGCATATACAGTTTGCGTGTCCAATGGGCCTCTCTTTGCAGTGATGGCC
GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCN

Query= MSMg01no516_c14.b1 MSMg01no516_c14.b1 CHROMAT_FILE:
MSMg01no516_c14.b1 PHD_FILE: MSMg01no516_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:46 2005
         (684 letters)



>mm_chr3_18077647_18078731
          Length = 1085

 Score = 1270 bits (657), Expect = 0.0
 Identities = 675/681 (99%), Gaps = 1/681 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctattttgggagttttagggtttgaatttcaagaagattctaaattgcaaaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gaattcctattttgggagttttagggtttgaatttcaagaagattctaaattgcaaaaga 826

                                                                       
Query: 65  agagtcaggcttgagcaactacacatgctgctactatctctgatgcctctggctgcttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 agagtcaggcttgagcaactacacatgctgctactatctctgatgcctctggctgcttcc 766

                                                                       
Query: 125 ggctatgattttgttaattgtcactacgtgcctgtgctgtgctataggctctgcttagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ggctatgattttgttaattgtcactacgtgcctgtgctgtgctataggctctgcttagct 706

                                                                       
Query: 185 ctttctttatctcttccaatccatgaaagaatagagctgtgaaaaacaataacaacacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctttctttatctcttccaatccatgaaagaatagagctgtgaaaaacaataacaacacag 646

                                                                       
Query: 245 aagagaaaatgaaaaactggccataaaatcatttttaaagtattcacgaaaaatgaaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aagagaaaatgaaaaactggccataaaatcatttttaaagtattcacgaaaaatgaaaca 586

                                                                       
Query: 305 tagtcaccaagacagaaataattcttaatctgctgtattgaacatgctacaataagacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tagtcaccaagacagaaataattcttaatctgctgtattgaacatgctacaataagacaa 526

                                                                       
Query: 365 ttagcacatgctacattgcacattgttaattgcagttagcattgttgatttggtgactga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttagcacatgctacattgcacattgttaattgcagttagcattgttgatttggtgactga 466

                                                                       
Query: 425 atagatagccttcttaaaaaattcagattcaattccagatagttttctaaaaa-gaaaag 483
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 465 atagatagccttctttaaaaattcagattcaattccacatagttttctaaaaaagaaaag 406

                                                                       
Query: 484 cttatctgaagaatatttagaatttcgaatgtcgctctcaagaatatctctgcagtgcct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttatctgaagaatatttagaatttcgaatgtcgctctcaagaatatctctgcagtgcct 346

                                                                       
Query: 544 ctctgtcttatggaaccaaaatgaagcattcaatccaagggcagagatatgctgggctgg 603
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctctgtcttatggaaccacaatgaagcattcaatccaagggcagagatatgctgggctgg 286

                                                                       
Query: 604 gacaaaagccacattgaggaacctcagcttctgctggaccttgtgtaaggctgagtaaag 663
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 285 gacaaaagccacattgaggaacctcagcttctgttggaccttgtataaggctgagtaaag 226

                                
Query: 664 tgtcagaactccagcatggca 684
           |||||||||||||||||||||
Sbjct: 225 tgtcagaactccagcatggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space:   724550
Effective search space used:   724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)