NGGGGGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCACTGATTATCCTATCTGTTGTGTACCAACACCATGAA
AACATTTTAAATTACTAATGTTCTGTAGTACAACTTGAAATGGGGAATGG
ATATACTTCCAGAAGTTCTATTATAGTACAGGATTGTTTTAGCTATCATG
GGTTTTTCTTTATCCTCATAAAACAGAAAACTGCTGTTTCAAGTTTGTGA
AAAATCTTGTTAAAATTTTGATTGGAATTACACTGAATTTGTAGATTGCT
TTTGGTAAGATGGCCATTTGTACTATATCAATCCTATAGTTCCATGAGCA
TGGGAAATCTTCCCTTCTTCTGGTATCTCCTTAATTTCTTTCTTAATTTC
TTTCTTCATAGATCTGAAGTTCTTGTCATATAGGTCTTTCATTTGCTTAG
TTAGAGTTACACCAAGATATTTCATAGTATTTGTAGATAATTTAAAGGAA
ATTTTTTTCACTAATTTTTTTTCTCAGTCTGTTATTTTCTGTATAAATGA
GGGATACTGATGTTTTTGAGATAATATTGTATTTAGCCACTTAGGTAAAT
GTGTTCTAAGCTGTAAAAGTTCTGCCTCACAGAATGTTTTTGTCAATGTT
TCTATTTTGTGGAATGATTTCAAAAGTACTGCTATTAGCGGCTCTTTGAA
AGTCTGGTGGAATTCTGTTAAGACCATATGGCCCTGGCTTCTTTTAGGGG

TTTTCCCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTAGAGGTTGAACATC
TGGTAATGTGGTTCATATGTCCTCCAACTTTGCACTCCAGAGATGCAGAA
AGACTGTCTTTTCTTCGTATTGTGATATTAATTGTCATCTGTGTCTTTTA
TTTTGCTTCAGTATGCACTAGGTGATTTGGCGTGCTTGAATCTGCTGCAT
CGTTCAAGGTAGATTGTTCTCCCAACTCTCTAAATATTAGCACTAAATTA
AGTAATTCTTCCAAAGACCAAATATCAACTACATAGGCAGAAAAAAAATG
TAATGTGTTATAAAACTTTTAAATAAATTGTAGACAAATGCAATCCAATA
AAAATAATGCTGAAATAAAAATACTAATTTAGTAGCCACAGTAAATGGCA
TCCATGGAGATGTGTAATTTTGAGGAAATAAACATAAAATGTGAATATTT
ATATTTTGTTAATTTTAATGATTTCAGAATTCTACTTTAAATCTTAATTA
GTTTCTCGACCCAGCATGCTTGGGCAACTGCTCTATCACAGATATACCAT
TTATAATAAGCTGTCATAAATGGCATATGTGGACATTTTTATCGCACACT
ACTTTCACTGGATGCTAATATCGTGAGCTTTTCATATACACATTGGAATT
TTGTGAGTCAATTGAGAACAAAACTGGAGTTTCAATTTCACTAT

Query= MSMg01no516_c16.g1 MSMg01no516_c16.g1 CHROMAT_FILE:
MSMg01no516_c16.g1 PHD_FILE: MSMg01no516_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:47 2005
         (661 letters)



>mm_chr3_46824342_46825402
          Length = 1061

 Score = 1239 bits (641), Expect = 0.0
 Identities = 656/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtagaggttgaacatctggtaatgtggttcatatgtcctccaactttgcactccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acagtagaggttgaacatctggtaatgtggttcatatgtcctccaactttgcactccaga 802

                                                                       
Query: 61  gatgcagaaagactgtcttttcttcgtattgtgatattaattgtcatctgtgtcttttat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 gatgcagaaagactgtcttttctttgtattgtgatattaattgtcatctgtgtcttttat 742

                                                                       
Query: 121 tttgcttcagtatgcactaggtgatttggcgtgcttgaatctgctgcatcgttcaaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgcttcagtatgcactaggtgatttggcgtgcttgaatctgctgcatcgttcaaggta 682

                                                                       
Query: 181 gattgttctcccaactctctaaatattagcactaaattaagtaattcttccaaagaccaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattgttctccctactctctaaatattagcactaaattaagtaattcttccaaagaccaa 622

                                                                       
Query: 241 atatcaactacataggcagaaaaaaaatgtaatgtgttataaaacttttaaataaattgt 300
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 621 atatcaactacataggcagaaaaaaaatgtaatgtgtaataaaacttttaaataaactgt 562

                                                                       
Query: 301 agacaaatgcaatccaataaaaataatgctgaaataaaaatactaatttagtagccacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacaaatgcaatccaataaaaataatgctgaaataaaaatactaatttagtagccacag 502

                                                                       
Query: 361 taaatggcatccatggagatgtgtaattttgaggaaataaacataaaatgtgaatattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatggcatccatggagatgtgtaattttgaggaaataaacataaaatgtgaatattta 442

                                                                       
Query: 421 tattttgttaattttaatgatttcagaattctactttaaatcttaattagtttctcgacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttgttaattttaatgatttcagaattctactttaaatcttaattagtttctcgacc 382

                                                                       
Query: 481 cagcatgcttgggcaactgctctatcacagatataccatttataataagctgtcataaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcatgcttgggcaactgctctatcacagatataccatttataataagctgtcataaat 322

                                                                       
Query: 541 ggcatatgtggacatttttatcgcacactactttcactggatgctaatatcgtgagcttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcatatgtggacatttttatcgcacactactttcactggatgctaatatcgtgagcttt 262

                                                                       
Query: 601 tcatatacacattggaattttgtgagtcaattgagaacaaaactggagtttcaatttcac 660
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tcatatacacattggaattttgtgagtcaattgagaacaaaactgtagtttcaatttcac 202

            
Query: 661 t 661
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)