NNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTGAACTTCTTTGAAAAACTAGTTTAATATTATTCAAGGC
CTACCACTTTTGATGCCAGGAAAATGTACCGTTAACTAAAATCTCCAAGG
AATTTGACTTACCTTCAGAAACCCCAGGTACAAATACAAAAACTGTACCG
TGTAGGGGATAAGAATCCTATTCTAGGCCTAATCAAGACTGGTCCACAGA
TTGCACATGTCTACTGCACGACTTAGGCTCTGTGTTTTCACCTGACTTTT
ACTACAAATTTCAAGAACAAGGATTCATGAAACTTCATGTGGGAAACACA
TATCTTTGGGACCAATTTTGAGACATGGCTTTTCTGGCAGCTCTCAGATT
GCAGGACTTCACTATGATTCTGGCAGCAATGAAACTCCTTGCTTGTTGAG
GCTTGAGATGACCACTCATCTATTTTTCCACACCAAAAAAAAGACAATTT
TTTTCACCAGCATAAAATTTCAGAATAGGATATGAACAAATCCAGAAAAC
AGTAGGAAAGACTTTCAATAGCAAATTAAGCAAAAACAAGGCAGCCACAT
GCAGTGGCTCACATCTGTAAACCTAGCATTCANGAGTTTGGGAGGGGATG
ATGGGAAGTTCAAGGCCAGGGTGGTCTATCAAGTGAGATCCTATCTNCAG
AAAATCTTTTGGTAAATTTTCTNAACTCAAAACAAAAGAAAACAAAACAA
CGATTC

NNNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACCGAACGG
ATGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACATCAGTCAGAATGGCTAA
GATCAAAATTTCAAGTGACAGCAGATGCTGGTGAGGATGTGGTGAAAGAG
GAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGG
AAATTAGTCTGGTGGGTCCTCAGAAAATTGGACATAGTACTACTGGAAGA
TCCAGCAATACCTCTCCTGGGCATATACTCAGAAAATTTTCCAACTTGTA
ATAAGGATACATGCTCCTCTATGTTCATAGCAGCCTTGTTTATAATAGAC
AGAAGTTGGAAAGAGCCCAGATGTCCCTCAACACAGGAATGGATACAGGA
AATGTAGTACATTTATACAATGGAGAACTACTCAGCTATTAAAAAATGAT
ACCTGTTGCAAAATACATGAGACTCAAGAAGAAGGAAGACCAAAGTTTGG
ATACTTTGGATACTTCGTTTCCCCTTAGAATGGGGAACAAAATACCCATG
GAAGGGGTTACAGAGACNAAGTTTAGAGCTGAGATGGAANGATGGACCAT
TCAGAGACTTCCCACCCGGGGATCCCATCCATAATACCACCAAACCAAGA
CTTATTG

Query= MSMg01no516_j11.b1 MSMg01no516_j11.b1 CHROMAT_FILE:
MSMg01no516_j11.b1 PHD_FILE: MSMg01no516_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:23 2005
         (648 letters)



>mm_chr3_126633549_126634598
          Length = 1050

 Score = 1176 bits (608), Expect = 0.0
 Identities = 635/645 (98%), Gaps = 2/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaacttctttgaaaaactagtttaatattattcaaggcctaccacttttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaattctctgaacttctttgaaaaactagtttaatattattcaaggcctaccacttttga 686

                                                                       
Query: 65  tgccaggaaaatgtaccgttaactaaaatctccaaggaatttgacttaccttcagaaacc 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 tgccaggaaaatgtaccgttaactaaaatctccagggaatttgacttaccttcagaaacc 626

                                                                       
Query: 125 ccaggtacaaatacaaaaactgtaccgtgtaggggataagaatcctattctaggcctaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaggtacaaatacaaaaactgtaccgtgtaggggataagaatcctattctaggcctaat 566

                                                                       
Query: 185 caagactggtccacagattgcacatgtctactgcacgacttaggctctgtgttttcacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagactggtccacagattgcacatgtctactgcacgacttaggctctgtgttttcacct 506

                                                                       
Query: 245 gacttttactacaaatttcaagaacaaggattcatgaaacttcatgtgggaaacacatat 304
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 gacttttactacaagtttcaagaacaaggattcatgaaacttcgtgtgggaaacacatat 446

                                                                       
Query: 305 ctttgggaccaattttgagacatggcttttctggcagctctcagattgcaggacttcact 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 ctttgggaccaattttgagacatggcttttctgacagctctcagattgcaggacttcact 386

                                                                       
Query: 365 atgattctggcagcaatgaaactccttgcttgttgaggcttgagatgaccactcatctat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgattctggcagcaatgaaactccttgcttgttgaggcttgagatgaccactcatctat 326

                                                                       
Query: 425 ttttccacacc--aaaaaaaagacaatttttttcaccagcataaaatttcagaataggat 482
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttccacaccaaaaaaaaaagacaatttttttcaccagcataaaatttcagaataggat 266

                                                                       
Query: 483 atgaacaaatccagaaaacagtaggaaagactttcaatagcaaattaagcaaaaacaagg 542
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 atgaacaaatccagaaaacagtaggaaagactttcaatagaaaattaagcaaaaacaagg 206

                                                                       
Query: 543 cagccacatgcagtggctcacatctgtaaacctagcattcangagtttgggaggggatga 602
           |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 205 cagctacatgcagtggctcacatctgtaaacctagcattcaggaatttgggaggggatga 146

                                                        
Query: 603 tgggaagttcaaggccagggtggtctatcaagtgagatcctatct 647
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tgggaagttcaaggccagggtggtctatcaagtgagatcctatct 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space:   663520
Effective search space used:   663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)