TTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGCTTTACAGTAAGGAGCCACAGTGCTGAAGACCAGATAG
TGGCTTCTTAGTAGGATGGCTGTCCAATCATCTGCCCAAAACTCTCTCTC
CCCAAGCTATACAAGAAAGACTTGGTACCTTGTATGTGAAATGCTAACAA
TGAAGTCTATTCTTGATTACTGTATATGTTTTTGTTTTTATTTGTATTTG
AGACAGTGTAGTTACAAACATGCATCATCATACCCAGTTTTGTAAAATGC
TGGGCATTGAACCCAAGACCTAGGTCCTGCTGAACTCGTACGTACTCTGA
GCTACATCCTAACCACAGTGTGTGAGCACTGAGCCCGCCCATTTCTTTGC
CCCAACTCCCTCCTCCTGCTAGGTCTGGCTCTGGCTCCCATTTTGCAACA
AACTTACATATCCATCAACTGTAGCTTAAGTGCATTAATTGGAGCCTTTC
AGGTTGGAACATTGAGCTGGCCCACTTCTTTGCCCCAACTCCCAACTCCC
CCTTCCTGCTAGGTCTGGCTCTGGCAACAAACTTACCTATCCATCAACTG
TAGCTGAAGTGAATAAATTGGAGCACTTCAGACATCACCAGTAGAGGCTG
CATGTTTTCTATGGACAATGCTGTCACACAGATGAGTAAGAGGGGAAGGT
CTACGGCCTGAAGCCCAAAGTGTCCCCAGGGCTCAGTGGGACCAAAGAAG
ATA

TTTCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATTAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAAT
TTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACN

Query= MSMg01no516_n13.b1 MSMg01no516_n13.b1 CHROMAT_FILE:
MSMg01no516_n13.b1 PHD_FILE: MSMg01no516_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:44 2005
         (662 letters)



>mm_chr3_21959227_21960288
          Length = 1062

 Score = 1145 bits (592), Expect = 0.0
 Identities = 645/674 (95%), Gaps = 19/674 (2%)
 Strand = Plus / Minus

                                                                        
Query: 8    ttcagctttacagtaaggagccacagtgctgaagaccagatagtggcttcttagtaggat 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ttcagctttacagtaaggagccacagtgctgaagaccagatagtggcttcttagtaggat 941

                                                                        
Query: 68   ggctgtccaatcatctgcccaaaa--ctctctctccccaagctatacaagaaagacttgg 125
            ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |
Sbjct: 940  ggctgtccaatcatctgcccaaaattctctctctccccaagctatacaagaaagacttcg 881

                                                                        
Query: 126  taccttgtatgtgaaatgctaacaatgaagtctattcttgattactgtatatgtttttgt 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  taccttgtatgtgaaatgctaacaatgaagtctattcttgattactgtatatgtttttgt 821

                                                                        
Query: 186  ttttatttgtatttgagacagtgtagttacaaacatgcatcatcatacccagttttgtaa 245
            ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 820  ttttatttgtatttgagacagtgtaattacaaacatgcatcatcatatccagttttgtaa 761

                                                                        
Query: 246  aatgctgggcattgaacccaagacctaggtcctgctgaactcgtacgtactctgagctac 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  aatgctgggcattgaacccaagacctaggtcctgctgaactcgtacgtactctgagctac 701

                                                                        
Query: 306  atcctaaccacagtgtgtgagcactgagcccgcccatttctttgccccaactccctcctc 365
            | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 700  accctaaccacagtgtgtgaacactgagcccgcccatttctttgccccaactccctcctc 641

                                                                        
Query: 366  ctgctaggtctggctctggctcccattttgcaacaaacttacatatccatcaactgtagc 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  ctgctaggtctggctctggctcccattttgcaacaaacttacatatccatcaactgtagc 581

                                                                        
Query: 426  ttaagtgcattaattggagcctttcaggttggaacattgagctggcccacttctttgccc 485
            ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 580  ttaagtggattaattggagcctttcaggttggaacattgagctggcccatttctttgccc 521

                                                                        
Query: 486  caactcccaac-----------------tcccccttcctgctaggtctggctctggcaac 528
            |||||||||||                 |||||| |||||||||||||| ||||||||||
Sbjct: 520  caactcccaacaactcccaactcccaactcccccctcctgctaggtctgactctggcaac 461

                                                                        
Query: 529  aaacttacctatccatcaactgtagctgaagtgaataaattggagcacttcagacatcac 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  aaacttacctatccatcaactgtagctgaagtgaataaattggagcacttcagacatcac 401

                                                                        
Query: 589  cagtagaggctgcatgttttctatggacaatgctgtcacacagatgagtaagaggggaag 648
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400  cagtaaaggctgcatgttttctatggacaatgctgtcacacagatgagtaagaggggaag 341

                          
Query: 649  gtctacggcctgaa 662
            ||||||||||||||
Sbjct: 340  gtctacggcctgaa 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)