BAC Information

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BAC

Clone NameMSMg01-516N24
Chromosome3 (Build37)
Map Location 38,851,201 - 38,851,549
singlet/doubletsinglet
Overlap geneFat4
Upstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516N24.T7 (MSMg01no516_n24.b1)MSMg01-516N24.TJ (MSMg01no516_n24.g1)
ACCAG588765AG588766
length770791
length of high quality
(start - end)		602 (54 - 655)526 (83 - 608)
definitionCHROMAT_FILE: MSMg01no516_n24.b1 PHD_FILE: MSMg01no516_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:46 2005CHROMAT_FILE: MSMg01no516_n24.g1 PHD_FILE: MSMg01no516_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTATAATTGTTTTTACACTGAATGTTCTGAGGGTAA
ATGAAACTTACTCCAGGGAATACACTGGGCTTCAACAGATCACAACCCAT
GTACATACCAGGCAGAAACATGTTTAGCATAGGAAGTTGGCCCCAGGACT
GCAGCATAAGCTCCTGTGTTCGATCCCCAAGAACTAACATAAAAATGTTA
GGTATGGTGAAAGACATTTGCAATTCCCATGCTGGGGACCCAGAGACAGG
TGGACTCTGGAAATCCACAGTCAGACTGACAAGCACACCTGACAGATTTC
AGGCCAGCGAGAGACTCTGTTTCATAAAACAAGGTGGGCAAGCCTACACA
ATGACAGCAGTACCTAAGCTGTGTACTCTGTACATGCAATCACATACAGC
AATTCACCCACACAGACACATACATGCACACACACACTAGTGCACAGAAA
TTAAAATAAAATAATGTTTTAAAAAATTCTTAACTTTATTATATACTGTA
GGCTAAACAAATCCCAGCCTTTCCAGGCACTGGATTCTTGCCAAAATATT
ATTCCAATAATAATACTATTGCCAATATATTATTATGAGAATATTATTTT
CATCTGATGATGTATAATTTAGTTATTCACTATCAAGTATTTTTCTTTAA
GAACTTTTTCTCTTTGTCTTTNAAATTTCATTTTTCAAAGTGTAAGTACA
TATGAAGTGGCAAGATGGCN

NNNNNNNCCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACA
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCCAGATATNAGATAT
AATTTGCTAAACACATGAAACTCANGAAGAAATGAAGACTGAGTGTGGAC
ACTATGCCTTCTCCTAGATTTGGGAACAAAACACCATGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_n24.b1 MSMg01no516_n24.b1 CHROMAT_FILE:
MSMg01no516_n24.b1 PHD_FILE: MSMg01no516_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:46 2005
         (602 letters)



>mm_chr3_38851201_38852202
          Length = 1002

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttataattgtttttacactgaatgttctgagggtaaatgaaacttactccagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaattccttataattgtttttacactgaatgttctgagggtaaatgaaacttactccagg 290

                                                                       
Query: 65  gaatacactgggcttcaacagatcacaacccatgtacataccaggcagaaacatgtttag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaatacactgggcttcaacagatcacaacccatgtacataccaggcagaaacatgtttag 230

                                                                       
Query: 125 cataggaagttggccccaggactgcagcataagctcctgtgttcgatccccaagaactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cataggaagttggccccaggactgcagcataagctcctgtgttcgatccccaagaactaa 170

                                                                       
Query: 185 cataaaaatgttaggtatggtgaaagacatttgcaattcccatgctggggacccagagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cataaaaatgttaggtatggtgaaagacatttgcaattcccatgctggggacccagagac 110

                                                                       
Query: 245 aggtggactctggaaatccacagtcagactgacaagcacacctgacagatttcaggccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aggtggactctggaaatccacagtcagactgacaagcacacctgacagatttcaggccag 50

                                                            
Query: 305 cgagagactctgtttcataaaacaaggtgggcaagcctacacaatgaca 353
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  cgagagactctgtttcataaaacaaggtgggcaagcctacacaatgaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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